tcpl: ToxCast Data Analysis Pipeline

The ToxCast Data Analysis Pipeline ('tcpl') is an R package that manages, curve-fits, plots, and stores ToxCast data to populate its linked MySQL database, 'invitrodb'. The package was developed for the chemical screening data curated by the US EPA's Toxicity Forecaster (ToxCast) program, but 'tcpl' can be used to support diverse chemical screening efforts.

Version: 3.2.0
Depends: R (≥ 3.5.0)
Imports: data.table (≥ 1.15.0), DBI, RMariaDB, numDeriv, RColorBrewer, utils, stats, methods, graphics, grDevices, sqldf, dplyr, tidyr, plotly, tcplfit2, ggplot2, gridExtra, stringr, rlang, ctxR
Suggests: roxygen2, knitr, prettydoc, rmarkdown, htmlTable, testthat (≥ 3.0.0), reshape2, viridis, kableExtra, colorspace, magrittr, vdiffr, httptest, rmdformats
Published: 2024-10-09
DOI: 10.32614/CRAN.package.tcpl
Author: Richard S Judson ORCID iD [ctb, ths], Dayne L Filer [aut], Jason Brown ORCID iD [cre], Sarah E Davidson-Fritz ORCID iD [ctb], Madison Feshuk ORCID iD [ctb], Carter Thunes [ctb], Ashley Ko [ctb], Kelly Carstens ORCID iD [ctb], Todd Zurlinden ORCID iD [ctb], Lori Kolaczkowski [ctb], Kurt Dunham [ctb], Parth Kothiya [ctb], Woodrow R Setzer [ctb], Matthew T Martin [ctb, ths], Katie Paul Friedman ORCID iD [ctb]
Maintainer: Jason Brown <brown.jason at epa.gov>
BugReports: https://github.com/USEPA/CompTox-ToxCast-tcpl/issues
License: MIT + file LICENSE
URL: https://github.com/USEPA/CompTox-ToxCast-tcpl, https://www.epa.gov/comptox-tools/toxicity-forecasting-toxcast
NeedsCompilation: no
Materials: README NEWS
CRAN checks: tcpl results

Documentation:

Reference manual: tcpl.pdf
Vignettes: 1. Introduction to tcpl and invitrodb (source, R code)

Downloads:

Package source: tcpl_3.2.0.tar.gz
Windows binaries: r-devel: tcpl_3.1.0.zip, r-release: tcpl_3.2.0.zip, r-oldrel: tcpl_3.1.0.zip
macOS binaries: r-release (arm64): tcpl_3.2.0.tgz, r-oldrel (arm64): tcpl_3.2.0.tgz, r-release (x86_64): tcpl_3.2.0.tgz, r-oldrel (x86_64): tcpl_3.2.0.tgz
Old sources: tcpl archive

Reverse dependencies:

Reverse suggests: Rcurvep, tcplfit2, toxEval

Linking:

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