All functions now include a .return_raw argument,
enabling the user to retrieve the raw JSON from API calls.
Functions that return a paginated response now include a
.verbose argument, which can be set to FALSE
to suppress pagination messages. The itemsPerPage argument
for these functions can also be set globally by adjusting option
“gtexr.itemsPerPage”.
get_dataset_info() has now been fixed (previously
returned an empty tibble).
Breaking changes:
get_sample_datasets_endpoints() has been renamed to
get_sample_datasets(). This is to match the naming
convention used for get_sample_biobank_data(), whereby
‘get_sample’ is appended with their respective category titles
‘datasets’ and ‘biobank_data’.
get_multi_tissue_eqtls() has been fixed to return a
tibble with one row per data item. Argument gencodeIds has
also been renamed to gencodeId to match the GTEx
API.
Various function arguments have been updated to match the GTEx API:
get_sqtl_genes() argument
tissueSiteDetailId has been pluralised to
tissueSiteDetailIds.
get_eqtl_genes(), get_sqtl_genes(),
get_exons(), get_neighbor_gene(),
get_subject(), get_tissue_site_detail(),
get_significant_single_tissue_sqtls(),
download() and get_sample_datasets() (formerly
called get_sample_datasets_endpoints()) default argument
values now match API.