eval_time = Inf
are now not always set to 0 and confidence
intervals at infinite evaluation times are now not always set to
NA
. This applies to proportional_hazards()
and
bag_tree()
models as well as models with the
partykit
engine, decision_tree()
and
rand_forest()
(#320).predict()
methods for flexsurv
models, in preparation for the upcoming flexsurv release (#317).multi_predict()
is now available for all prediction
types for proportional_hazards()
models with the
"glmnet"
engine, so newly also for
type = "time"
and type = "raw"
(#277,
#282).
Random forests with the "aorsf"
engine can now
predict survival time, i.e., predict(type = "time")
is now
available (#308).
survival_prob_*()
, survival_time_*()
,
and hazard_*()
helper functions now all take a parsnip
model_fit
object as the main input, instead of an engine
fit as was the case for some of them previously (#302).extract_fit_engine()
now works properly for
proportional hazards models fitted with the "glmnet"
engine
(#266).
multi_predict(type = "survival")
for
proportional_hazards(engine = "glmnet")
models: when used
with a single penalty
value, this value is now included in
the results. It was previously omitted (#267, #282).
proportional_hazards(engine = "glmnet")
models now
don’t pretend to be able to deal with sparse matrices when they are not
(#291).
Fixed a bug for
proportional_hazards(engine = "glmnet")
where prediction
didn’t work for a workflow()
with a formula as the
preprocessor (#264).
survival_time_coxnet()
and
survival_prob_coxnet()
gain a multi
argument
to allow multiple values for penalty
(#278, #279).The new eval_time
argument replaces the
time
argument for the time points at which to predict
survival probability and hazard. The time
argument has been
deprecated (#244).
The matrix interface for fitting, fit_xy()
, now
works for censored regression models (#225, #234, #247, #251).
Improved error messages throughout the package (#248).
Added the new "aorsf"
engine for
rand_forest()
for accelerated oblique random survival
forests with the aorsf package (@bcjaeger, #211).
Added the new flexsurvspline
engine for
survival_reg()
(@mattwarkentin, #213).
Predictions of type "linear_pred"
for
survival_reg(engine = "flexsurv")
are now on the correct
scale for distributions where the natural scale and the unrestricted
scale of the location parameter are identical,
e.g. dist = "lnorm"
(#229).
Predictions of type "linear_pred"
for
proportional_hazards(engine = "glmnet")
via
multi_predict()
now have the same sign as those via
predict()
(#242).
Predictions of survival probability for
survival_reg(engine = "flexsurv")
for a single time point
are now nested correctly (#254).
Predictions of survival probability for
decision_tree(engine = "rpart")
for a single observation
now work (#256).
Predictions of type "quantile"
for
survival_reg(engine = "survival")
for a single observation
now work (#257).
Fixed a bug for printing coxnet
models, i.e.,
proportional_hazards()
models fitted with the
"glmnet"
engine (#249).
Predictions of survival probabilities are now calculated via
summary.survfit()
for proportional_hazards()
models with the "survival"
and "glmnet"
engines, bag_tree()
models with the "rpart"
engine, decision_tree()
models with the
"partykit"
engines, as well as rand_forest()
models with the "partykit"
engine (#221, #224).
Added internal survfit_summary_*()
helper functions
(#216).
For boosted trees with the "mboost"
engine, survival
probabilities can now be predicted for time = -Inf
. This is
always 1. For time = Inf
this now predicts a survival
probability of 0 (#215).
Updated tests on model arguments and update()
methods (#208).
Internal re-organisation of code (#206, 209).
Added a NEWS.md
file to track changes to the
package.