SOHPIE: Statistical Approach via Pseudo-Value Information and Estimation

'SOHPIE' (pronounced as SOFIE) is a novel pseudo-value regression approach for differential co-abundance network analysis of microbiome data, which can include additional clinical covariate in the model. The full methodological details can be found in Ahn S and Datta S (2023) <doi:10.48550/arXiv.2303.13702>.

Version:	1.0.6
Depends:	R (≥ 3.5.0)
Imports:	robustbase, parallel, dplyr, fdrtool, gtools, stats
Suggests:	knitr, rmarkdown, testthat (≥ 3.0.0)
Published:	2023-10-23
DOI:	10.32614/CRAN.package.SOHPIE
Author:	Seungjun Ahn [cre, aut, trl], Somnath Datta [ctb, ths]
Maintainer:	Seungjun Ahn <seungjun.ahn at mountsinai.org>
License:	GPL-3
NeedsCompilation:	no
Language:	en-US
CRAN checks:	SOHPIE results

Documentation:

Reference manual:	SOHPIE.html , SOHPIE.pdf
Vignettes:	An Introduction to SOHPIE (source, R code)

Downloads:

Package source:	SOHPIE_1.0.6.tar.gz
Windows binaries:	r-devel: SOHPIE_1.0.6.zip, r-release: SOHPIE_1.0.6.zip, r-oldrel: SOHPIE_1.0.6.zip
macOS binaries:	r-release (arm64): SOHPIE_1.0.6.tgz, r-oldrel (arm64): SOHPIE_1.0.6.tgz, r-release (x86_64): SOHPIE_1.0.6.tgz, r-oldrel (x86_64): SOHPIE_1.0.6.tgz
Old sources:	SOHPIE archive

Linking:

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