FLORAL: Fit Log-Ratio Lasso Regression for Compositional Data
Log-ratio Lasso regression for continuous, binary, and survival outcomes with (longitudinal) compositional features. See Fei and others (2024) <doi:10.1016/j.crmeth.2024.100899>.
| Version: | 0.5.0 |
| Depends: | R (≥ 3.5.0) |
| Imports: | Rcpp (≥ 1.0.9), stats, survival, ggplot2, survcomp, reshape, dplyr, glmnet, caret, grDevices, utils, mvtnorm, doParallel, doRNG, foreach, msm, phyloseq |
| LinkingTo: | Rcpp, RcppArmadillo, RcppProgress, ast2ast |
| Suggests: | covr, knitr, rmarkdown, spelling, testthat (≥ 3.0.0), patchwork, tidyverse |
| Published: | 2025-07-13 |
| DOI: | 10.32614/CRAN.package.FLORAL |
| Author: | Teng Fei  [aut,
cre, cph],
Tyler Funnell
[aut],
Nicholas Waters
[aut],
Sandeep Raj [aut] |
| Maintainer: | Teng Fei <feit1 at mskcc.org> |
| BugReports: | https://github.com/vdblab/FLORAL/issues |
| License: | GPL (≥ 3) |
| URL: | https://vdblab.github.io/FLORAL/ |
| NeedsCompilation: | yes |
| SystemRequirements: | C++17 |
| Language: | en-US |
| Materials: | README, NEWS |
| In views: | CompositionalData |
| CRAN checks: | FLORAL results |
Documentation:
| Reference manual: | FLORAL.html , FLORAL.pdf |
| Vignettes: |
Using FLORAL for Microbiome Analysis (source, R code) Using FLORAL for survival models with longitudinal microbiome data (source, R code) Using FLORAL with phyloseq data (source, R code) |
Downloads:
| Package source: | FLORAL_0.5.0.tar.gz |
| Windows binaries: | r-devel: FLORAL_0.5.0.zip, r-release: FLORAL_0.5.0.zip, r-oldrel: FLORAL_0.5.0.zip |
| macOS binaries: | r-release (arm64): FLORAL_0.5.0.tgz, r-oldrel (arm64): FLORAL_0.5.0.tgz, r-release (x86_64): FLORAL_0.5.0.tgz, r-oldrel (x86_64): FLORAL_0.5.0.tgz |
| Old sources: | FLORAL archive |
Linking:
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