CohortConstructor: Build and Manipulate Study Cohorts Using a Common Data Model

Create and manipulate study cohorts in data mapped to the Observational Medical Outcomes Partnership Common Data Model.

Version: 0.3.1
Depends: R (≥ 4.1)
Imports: CDMConnector (≥ 1.3.1), checkmate, cli, dbplyr (≥ 2.5.0), dplyr, glue, magrittr, omopgenerics (≥ 0.2.1), PatientProfiles (≥ 1.2.0), purrr, rlang, tidyr, utils
Suggests: DBI, CodelistGenerator, DrugUtilisation, duckdb, knitr, rmarkdown, testthat (≥ 3.0.0), tibble, stringr, IncidencePrevalence, omock (≥ 0.2.0), covr, RPostgres, odbc, CohortCharacteristics, ggplot2, DiagrammeR, visOmopResults, gt, scales, here, ggpubr
Published: 2024-10-08
DOI: 10.32614/CRAN.package.CohortConstructor
Author: Edward Burn ORCID iD [aut, cre], Marti Catala ORCID iD [aut], Nuria Mercade-Besora ORCID iD [aut], Marta Alcalde-Herraiz ORCID iD [aut], Mike Du ORCID iD [aut], Yuchen Guo ORCID iD [aut], Xihang Chen ORCID iD [aut], Kim Lopez-Guell ORCID iD [aut], Elin Rowlands ORCID iD [aut]
Maintainer: Edward Burn <edward.burn at ndorms.ox.ac.uk>
License: Apache License (≥ 2)
URL: https://ohdsi.github.io/CohortConstructor/
NeedsCompilation: no
Materials: README
CRAN checks: CohortConstructor results

Documentation:

Reference manual: CohortConstructor.pdf
Vignettes: a00_introduction (source, R code)
a01_building_base_cohorts (source, R code)
a02_cohort_table_requirements (source, R code)
a03_require_demographics (source, R code)
a04_require_intersections (source, R code)
a04_update_cohort_start_end (source)
a05_concatanate_cohorts (source, R code)
a07_filter_cohorts (source, R code)
a07_split_cohorts (source, R code)
a08_combine_cohorts (source, R code)
Generate a matched age and sex cohort (source, R code)
a11_benchmark (source, R code)

Downloads:

Package source: CohortConstructor_0.3.1.tar.gz
Windows binaries: r-devel: CohortConstructor_0.3.1.zip, r-release: CohortConstructor_0.3.1.zip, r-oldrel: CohortConstructor_0.3.1.zip
macOS binaries: r-release (arm64): CohortConstructor_0.3.1.tgz, r-oldrel (arm64): CohortConstructor_0.3.1.tgz, r-release (x86_64): CohortConstructor_0.3.1.tgz, r-oldrel (x86_64): CohortConstructor_0.3.1.tgz
Old sources: CohortConstructor archive

Reverse dependencies:

Reverse imports: OmopSketch
Reverse suggests: CohortCharacteristics

Linking:

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