Last updated on 2026-07-23 09:50:50 CEST.
| Flavor | Version | Tinstall | Tcheck | Ttotal | Status | Flags |
|---|---|---|---|---|---|---|
| r-devel-linux-x86_64-debian-clang | 1.0.0-10 | 6.34 | 65.91 | 72.25 | NOTE | |
| r-devel-linux-x86_64-debian-gcc | 1.0.0-10 | 5.36 | 48.74 | 54.10 | ERROR | |
| r-devel-linux-x86_64-fedora-clang | 1.0.0-10 | 11.00 | 106.73 | 117.73 | OK | |
| r-devel-linux-x86_64-fedora-gcc | 1.0.0-10 | 53.35 | OK | |||
| r-devel-windows-x86_64 | 1.0.0-10 | 15.00 | 102.00 | 117.00 | OK | |
| r-patched-linux-x86_64 | 1.0.0-10 | 7.06 | 62.28 | 69.34 | OK | |
| r-release-linux-x86_64 | 1.0.0-10 | 7.12 | 62.32 | 69.44 | OK | |
| r-release-macos-arm64 | 1.0.0-10 | 2.00 | 24.00 | 26.00 | OK | |
| r-release-macos-x86_64 | 1.0.0-10 | 6.00 | 85.00 | 91.00 | OK | |
| r-release-windows-x86_64 | 1.0.0-10 | 14.00 | 98.00 | 112.00 | OK | |
| r-oldrel-macos-arm64 | 1.0.0-10 | OK | ||||
| r-oldrel-macos-x86_64 | 1.0.0-10 | 6.00 | 73.00 | 79.00 | OK | |
| r-oldrel-windows-x86_64 | 1.0.0-10 | 16.00 | 110.00 | 126.00 | OK |
Version: 1.0.0-10
Check: CRAN incoming feasibility
Result: NOTE
Maintainer: ‘Danny Arends <Danny.Arends@gmail.com>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = "Danny",
family = "Arends",
role = c("aut", "cre"),
email = "Danny.Arends@gmail.com"),
person(given = "Yang",
family = "Li",
role = "aut"),
person(given = c("Gudrun", "A"),
family = "Brockmann",
role = "aut"),
person(given = c("Ritsert", "C"),
family = "Jansen",
role = "aut"),
person(given = c("Robert", "W"),
family = "Williams",
role = "aut"),
person(given = "Pjotr",
family = "Prins",
role = "aut"))
as necessary.
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc
Version: 1.0.0-10
Check: tests
Result: ERROR
Running ‘GeneExpression_Yeast_RBrem.R’ [1s/1s]
Running ‘test_ctl_long.R’ [6s/6s]
Running ‘test_openmp.R’ [1s/1s]
Running the tests in ‘tests/GeneExpression_Yeast_RBrem.R’ failed.
Complete output:
> # Analysis script for the Yeast GeneExpression
> # Paper senior author: RBrem 20??, Published in: Plos
> #
> # (C) 2012 Danny Arends - GBIC - University of Groningen
> # - Files are distributed with the Rctl package in Rctl/tests
>
> # Start by:
> # setwd("~/Github/Rpackages/CTLmapping/Rctl/tests")
>
> library(ctl)
Loading required package: MASS
Loading required package: parallel
Loading required package: qtl
>
> probeannot <- read.csv("GeneExpression_Yeast_Annotation.txt", sep="\t", header=TRUE, row.names=1)
> cross <- read.cross("csvr", file="GeneExpression_Yeast_RBrem.csvr", geno=c("AA","AB"))
--Read the following data:
109 individuals
282 markers
301 phenotypes
--Cross type: bc
> cross <- convert2riself(cross)
> cross <- fill.geno(cross) # Fill the genotypes
> cross <- calc.genoprob(cross) # Calculate genotype probabilities
>
> ctls <- CTLscan.cross(cross, phenocol = c(1:5), qtl = FALSE, verbose = TRUE)
Data 301 phenotypes, 109/109 individuals, 282 markers
Data checks finished after: 0 seconds
Data ranking finished after: 0.01 seconds
R_mapctl, verbose=1Phenotype 1: Mapping, toLOD
Phenotype A_06_P1085: Done after 0.118 0 seconds
R_mapctl, verbose=1Phenotype 2: Mapping, toLOD
Phenotype A_06_P6147: Done after 0.156 0 seconds
R_mapctl, verbose=1Phenotype 3: Mapping, toLOD
Phenotype A_06_P3469: Done after 0.139 0 seconds
R_mapctl, verbose=1Phenotype 4: Mapping, toLOD
Phenotype A_06_P4255: Done after 0.137 0.002 seconds
R_mapctl, verbose=1Phenotype 5: Mapping, toLOD
Phenotype A_06_P2638: Done after 0.117 0 seconds
Done after: 0.684 seconds
>
> for(x in 1:5) {
+ qtls <- scanone(cross, pheno.col = x) # Scan for QTLS
+ ctls[[x]]$qtls <- qtls[,3]
+ }
Warning message:
In checkcovar(cross, pheno.col, addcovar, intcovar, perm.strata, :*** buffer overflow detected ***: terminated
Aborted
Flavor: r-devel-linux-x86_64-debian-gcc