a031ce0838f686d138eb4b04300c7f29 *DESCRIPTION
c5bc71e02d8162dca59f40ff05b1fdc4 *NAMESPACE
7c784774bcca9aa47e3dcaf0e3492dcc *NEWS.md
729c2443d9a6fd345333d250ea79e42f *R/ATAC.R
497723a614c32ac0919934e06d168225 *R/DEG_marker.R
7c9fa2644435e026e51cafc930bfcd7d *R/GSEA.R
9f0c49cd1124e4ec494517ca10e4482c *R/RcppExports.R
3937f1f8020b3e0f06d545fb012d8ff5 *R/aaa.R
75d2211286a4ae78238cef65d10001be *R/archive.R
0710761bab4de41b6f1537fa3289c901 *R/cINMF.R
e20ad5f819aef6bdcdd5fa770740ebe9 *R/classConversion.R
b5ef472640403539f47b3677a8b6f788 *R/classes.R
5db631d2553255d50419b4b741fdb2fb *R/clustering.R
492bde30bb07f681dcf04e02e4ec4bbf *R/data.R
0b35f08026f72a8f8430cf15c743f104 *R/deprecated.R
5507dea6afc5f4791f70f33f124a142d *R/dotplot.R
c1a2873b442b9b967691b2f7f08a1757 *R/downsample.R
dfc6de8e101cddb6273266553a83bb96 *R/embedding.R
f8df31fce2a232a93ecde710f725deac *R/factorGSEA.R
b2d105752902010b12159058afbf62d5 *R/factorMarker.R
d3d8db03616af793c10040a4ec962e83 *R/generics.R
58a3d69f29ed65a455e744e2644ebe20 *R/ggplotting.R
1b77c86c8eed0ff2b4f3ab6e2fbbf69e *R/h5Utility.R
9274066c2b08a60484529c8ce4f88199 *R/h5ad.R
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23b943d63b805f0c3c546acecbb94098 *R/import.R
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4a89a7baa17387981064b1b15deaa7f4 *R/liger-methods.R
868c006ce690402f4977652454cdec10 *R/ligerCommand_relates.R
783e8ba336daa0a28c3df604dbf57495 *R/ligerDataset-methods.R
283a361f259ac6a6a3e0e143f32596a3 *R/ligerDataset_subclass-methods.R
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2865a9c813791d27e3b1d5d76920831f *R/preprocess.R
d7a54580ba6b0c63cf4b2782267b6f43 *R/rliger-package.R
0999a299a213e84d7848ab69a0e321b3 *R/selectBatchHVG.R
3b5fababdb60c6d61152036532e7a063 *R/subsetObject.R
5744327da99bc07b42f2a20b2f1ade2b *R/suggestK.R
bb33f50b816b592b6d1bb4e95fb93873 *R/util.R
fa93048c48bed22def1bc37099180b76 *R/visualization.R
a6b8aa82a8af9f05ae966ca69949fa1c *README.md
1bf18d9c216b8d95033f0bd2fe2906b2 *build/partial.rdb
f3945a433b000d4a5af2669427f83153 *build/vignette.rds
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5792fafcce9de45c6c68d2c346eace3e *data/ccGeneHuman.rda
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56ab22c6f90ce373af5dcf4db7a0f988 *man/plotPairwiseDEGHeatmap.Rd
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43c866d723261aaaaf598523565df7f9 *man/plotSankey.Rd
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22dee0fa1ac0ef518505d73ba73add23 *man/writeH5.Rd
a444b0a17979ff58e003785accb9ffe5 *man/writeH5AD.Rd
29bfdfcced57d846e658fcb684c0261c *src/Makevars
29bfdfcced57d846e658fcb684c0261c *src/Makevars.win
7e5cf32d81c12a5362b3739355d94802 *src/ModularityOptimizer.cpp
0bfda1b8f1b6d7667f7ef534168b8c8a *src/ModularityOptimizer.h
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5db832d48e966982c47ed3fec34cdcfd *src/centoidAlign.cpp
4e6ffee072223c5bdb0f33563120fbb2 *src/data_processing.cpp
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4333ddb812e22110c178f06060f2a2a3 *src/objErr.cpp
598152f482b05934286a03752cb56de2 *src/quantile_norm.cpp
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2a43371204c10386154f4dfe6adebeb8 *src/wilcoxon.cpp
ded24bd60a18e5bbbb6dabea7b75de00 *tests/testthat.R
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2cbadad46106c58964d91c9812f4e654 *tests/testthat/test_visualization.R
cb537dd5167779db5505887817f5c076 *vignettes/liger_vignette.Rmd
