35bd09242a402daf3c034074f0835e8a *DESCRIPTION
0ac37ea125fd78f0c7500b715fac9b8b *NAMESPACE
df6cc46bc7fae1a55b713f3d5065b35a *R/RZooRoH-package.R
6f6800925e7d7e04b2cdc02be192cfe8 *R/data.R
bb719eeabfd47b10365ed0e54f3cc8ba *R/lib_kl.R
7c2f04e1cf09a373e55d314350139336 *R/lib_mixkl.R
44d78e6ae05553731bebec5e6abc7af4 *R/param_function.R
d50535e6cc03f4110990f2797ae71553 *R/prob_emission.R
798d8e360b24c9015bacb816b98ea9a5 *R/read_zdata.R
60739b35b32ed51aec3db28467b26e2f *R/zookin.R
1f779a41f7d69d37e01dd5fd7bb78f54 *R/zookin_accessor.R
a92017dec9ff53544e5945f3700fce82 *R/zooplot_segments.R
c3b39703f3fb136a580ec8a04c9a3593 *R/zooroh.R
2402e4924878739d0a83a94d808263ac *R/zooroh_accessor.R
92373a0a1ce61c4fb933b4e84f5df08b *R/zooroh_model.R
c2b671a5f60c578a50887e04a5ae954a *R/zplot_individual.R
359aa97ba9eef170fedfd800f8fa0ba4 *R/zplot_prophbd.R
7c5ef511c49387050f2add7a6665aa21 *R/zplot_vertical.R
20c8d3f97d93e2e318a22508275b5a02 *build/partial.rdb
67cb48337d5b713316146be9b6c72e8c *build/vignette.rds
d4da291bc18ea28292daf78aea66b39d *data/BBB_NMP_GP_subset.RData
a558e5b3d0fd40d0a3a58cf469da5ef4 *data/BBB_NMP_ad_subset.RData
3120d1696f9d568980628a6613017614 *data/BBB_NMP_pl_subset.RData
572c1dce386660f1bac783cb23f97e19 *data/BBB_PE_gt_subset.RData
65dc644ae028f73581b8bec8183a3d43 *data/BBB_samples.RData
431e596b7742cba9c3f99d3e7a1d4b0a *data/Local_IBD.RData
ab830e019a0241fb3e60b4c91b9c5c1b *data/genoex.RData
e93167884ca009be5f480853737601a9 *data/genosim.RData
b2d8c67abde767b054d0ecbc2d938e70 *data/kintaf_mix4l.RData
f71b4fc832bf5502f4ee615f5d50b0ef *data/rara_mix10l.RData
ef4a15d1d73ba2d22e2148cb223c693e *data/soay_mix10l.RData
e630101b3e0d7bce671e3b2c02ca347f *data/typs.RData
204566d4f41c08f08caee17a3ae1c252 *data/typsfrq.RData
22c724b61a82d7c003b4a84cffaafda5 *data/wilt_mix10l.RData
552f7026f0eb61612f6bc1552f6e7bf7 *inst/CITATION
5f4d6c76135b2c25a9888fa3bf756424 *inst/doc/zooroh-vignette.R
dc260908f6e3c8dc778168cf17d16e0a *inst/doc/zooroh-vignette.Rmd
c7c5d2d34ce22d9917d8846d0fc24e9d *inst/doc/zooroh-vignette.pdf
ccf009f88ff00893e8e96bf8c00bdb95 *inst/exdata/BBB_NMP_GP_subset.txt
f7195865d31b2aa3ba16ae5c4eb42512 *inst/exdata/BBB_NMP_ad_subset.txt
66278d9dd795a9cccbd587b63399e145 *inst/exdata/BBB_NMP_pl_subset.txt
f7195865d31b2aa3ba16ae5c4eb42512 *inst/exdata/BBB_NMP_subset.txt
0d0520f44a42528f100ccfeb8d96aa29 *inst/exdata/BBB_PE_gt_subset.txt
06b48d5426a08c546912b2c545efaeae *inst/exdata/BBB_samples.txt
7d19b2d3423cd6a774af56836e6b6d01 *inst/exdata/Ref22_EX.haps
52919ba1396fc53e6cd40706f8c17009 *inst/exdata/TAF_phased_ex.vcf
71eabd71fe1530e4a977459c1aca09c7 *inst/exdata/genoex.txt
a2d3e27f68fff30a4551f433fcba6e6e *inst/exdata/genosim.txt
3df4e09e7b68b5bb6af181e6f9971c8c *inst/exdata/typs.txt
769d7033220f3dd9304ebdba176b9230 *inst/exdata/typsfrq.txt
b8fb89a7d0734f7ca96eac0936e627f5 *man/BBB_NMP_GP_subset.Rd
63d280996615bdd0b500a3fb84c48475 *man/BBB_NMP_ad_subset.Rd
47e7ceeacf217668bb9ae8451b4a290e *man/BBB_NMP_pl_subset.Rd
3f43dfb9158e38174857b829027af898 *man/BBB_PE_gt_subset.Rd
2b14aba00aca9ba92587d1de13a252eb *man/BBB_samples.Rd
7f2df83fde5bf75653935341224b0385 *man/RZooRoH-package.Rd
e5c0de1e3444c63eccaf35f803e54e4e *man/cumhbd.Rd
34a48ba98b3764d422ef4aeae47f5a29 *man/cumkin.Rd
ee34844ecff230cc193f45eafc885e53 *man/genoex.Rd
e794096f525335b67523386d7a71830d *man/genosim.Rd
a34429fbde37cd78fe4344399a81c1a1 *man/hbd1.Rd
416880f7f28226fed918f8c6be77add2 *man/hbd2.Rd
1d714f9e57a9b196c6e1c1d2c70e65ec *man/kintaf_mix4l.Rd
de3d3c576922528cf4403e5cf811b8e1 *man/map1.Rd
0d5fa489cc4b2818b9cd47feee2b118e *man/merge_zres.Rd
6f9213dc3e5ba1dfb1a301f22eac0d16 *man/predhbd.Rd
7acec0103b772fde14cf1a85f8b82363 *man/probhbd.Rd
2268a3381452bf19df013242703ceba6 *man/rara_mix10l.Rd
e6314be1af9b342ab2ee2dfe2332758f *man/realized.Rd
920b2ded17ebebd6041ffa50cd7349cc *man/rohbd.Rd
81077c830f2d87d046333e21e200027d *man/soay_mix10l.Rd
000031cdf0e83f431e70a0ce42277dde *man/typs.Rd
87323473b7d7394e68eb20250488d801 *man/typsfrq.Rd
f35fdd2b6420b098f3781302aa89a9f6 *man/update_zres.Rd
0d7cf11c954a5e5f66076eb31fce934c *man/wilt_mix10l.Rd
3af8a9706de5681401f86cae199f7f94 *man/zoodata.Rd
64dc761bbfd5d369ef516b94368da981 *man/zookin.Rd
bdf74ac06f2f5398585b82218abb6ee6 *man/zoomodel.Rd
790b42d4222da958bf16e37d432f38aa *man/zooplot_hbdseg.Rd
6e9eabe7d1246cccbf65e1afe0212e76 *man/zooplot_individuals.Rd
07f4910fe4f1cc3748806a0ac054d18b *man/zooplot_partitioning.Rd
b48c961e03c1ec827b140bc72db1e642 *man/zooplot_prophbd.Rd
1c724a75a13fada1bcf8ae5d30c2af20 *man/zoorun.Rd
7128043f50f87f2575e4b9a88b882671 *src/Freqem_AD.f90
bdf14903fa041bbd26ce263dbc8aa701 *src/Freqem_GP.f90
2099a6bd54de851672db590b8c886c09 *src/Freqem_PL.f90
d695666d5aaeb2c2926d58c00c28a845 *src/RZooRoH_init.c
f9d67c093716b7379fdbc7414030aa4a *src/zoolayerFB.f90
c0ccaaea87979c2cfaa853d507e6d8c1 *src/zoolayerViterbi.f90
c8433f03ae9a0524fc43f38e3bde6b92 *src/zoolayerlik.f90
8f1054d49a4fc1403fe9f1f2db65c658 *src/zoosumlayerFB.f90
3617ffec23ffa178172a339c0be3bd8d *src/zoosumlayerFB2.f90
50af88199fcfeb7f8405c0ec6caad151 *src/zoosumlayerViterbi.f90
9434f69f311904e072e4aea85ca421b9 *src/zoosumlayerViterbi2.f90
f5fa61af1ae52d6c52ca111dd32f0275 *src/zoosumlayerlik.f90
5d8b134e91a5484179ec3f21ca4326bb *src/zoosumlayerlik2.f90
f85cef421d1b6ec23f1fbec47b6da94d *tests/testthat.R
04028a05e35ed5ea441d72a1c03ffce1 *tests/testthat/test1.R
e61ae047255fa859bd0edc3f4efe86c0 *tests/testthat/test2.R
a4ecb925465606ccd29a04acc8583b3a *vignettes/BBB_hdbseg_densities.pdf
fb0694195e0028174593abd0082d3738 *vignettes/Effect_density_error_lowfoldII.pdf
fe4426d9d3a076635d24adec1b00cb83 *vignettes/Fig4hb_barplot_filteredRR.pdf
c62142aa5777b16e16db048b52a228a9 *vignettes/Figure1.pdf
396e46384cc2424cf4fd1e722d860214 *vignettes/Figure2.pdf
59123240a52c74bf180f354c080a38f0 *vignettes/biomed-central.csl
2ee8a5e250b5e4a1693aa412cfe57bd5 *vignettes/genetics.csl
3eec2bd7b084b4a016a2637ee21e55cf *vignettes/rzoo.bib
dc260908f6e3c8dc778168cf17d16e0a *vignettes/zooroh-vignette.Rmd
