f93122caf196c2a46f2dddf4f652c65d *DESCRIPTION
b759cd27cc08e94837f831dbc05007d0 *NAMESPACE
a5bc92d636f85f89fcacdc6c2e73d330 *NEWS.md
b04300b1ccb9c14b778f67086b13696f *R/AlleleTrim.R
a728db153543b7ad235507555b1e20b8 *R/BDstrat.R
c05f9a4ecad6ea3564d40bf5d4b80b7c *R/BDtoPyPop.R
92a52794017869a92cff279f21bc7845 *R/BuildAlleleListHistory.R
4f66bad6dec3b475d964419c0d84f1a2 *R/GIANT.R
cc22f67664cd8145bd7670bdc3aca032 *R/GLStoUNI.R
29a794019d946776184bee6f53454978 *R/GLupdater.R
afb13c784345ef8415240dd9d7d64dbd *R/SearchandBuildAlignments.R
bc61fd978182a07f7dfcc5ec1651150f *R/ThirdPartyFunctions.R
dbb7f8c51926e6866d3868fbd4053238 *R/UNItoGLS.R
1a6dadfd55f710896e31eaf78845da91 *R/UpdateAll.R
c3965cb73326de08cb16293b35000f13 *R/VersionValidation.R
d9ee22ce773344b6bc7493fbc41cb4d8 *R/accessoryFunctions.R
b387f61e8e870e310c0ec648b74e09df *R/alignmentFull.R
58c871906808a12fba8b6693e2dc96eb *R/atlasFull.R
3e834c4584875f7b8927c105449a722f *R/atlasMaker.R
3669c956f0d60db078e5f4d44d46f49c *R/buildAlignments.R
0822ebdac34791d55a0276ac2c379ff1 *R/buildGazetteer.R
848fb20ad1ce4609cce6d41d10974340 *R/checkgDNAStart.R
f07194406c977b1c6a8982515f14bb64 *R/compareSequences.R
e28921ed56d5dbe45b8cfd223fdb570b *R/data.R
3cb5e9e84729d04c2827819f010e3a61 *R/extractGeneTypes.R
704b8041bc722f76a30c76bf330fdc54 *R/extractGenomicReferenceGenes.R
e19035f7ef3165f1b9352eb78431b5d6 *R/fragmentFeatureNames.R
f5577bcdf643a4ccb7e169471a06963f *R/globals.R
8b7eb1b1f141cea46ad272a2c9544035 *R/locusValidator.R
2e98f685e435982135dec13d2a9d723a *R/motifMatch.R
8006c7b289b382d485c17e7e20958b63 *R/relRisk.R
af7c2788e4d26cdbe12957d3955d2e86 *README.md
25020fd84462fbcf8b6597814a0c3960 *build/vignette.rds
4ad6e6d21528fabfc16f906acd2f73b5 *data/GLSC.ex.rda
b3334e3e37cf0a7422bff943b93268f8 *data/GLstring.ex.rda
b590f22cb4d4fa0b2e130ba3d8fc99b1 *data/HLAatlas.rda
0e6612aff5552b9c813702fe92f6d625 *data/HLAgazetteer.rda
36b46d86bf54ff69e7ec7a30aedbf903 *data/IMGTGenomicReferences.rda
e4736317dcd01582b33822ecb349ca17 *data/IMGTHLAGeneTypes.rda
0b4ddd41998fb79b4d8f867cd5a7d06e *data/UNIFORMAT.example.rda
76f390a70cc907c4015fbbeb38fd30fd *data/alleleListHistory.rda
e1da3a1acfb9d9d5d2a6f756333f6ac8 *data/fragmentFeatureNames.rda
143efdb1dc0d7306a0849011fa1aa09c *data/sHLAdata.rda
be11c7cdb124391436c954f8edd83ee4 *inst/doc/HLAtools.R
4d5e2dfd06b85b8d65626defdca3094d *inst/doc/HLAtools.Rmd
0862bc8fca9035177f509670dcb7a168 *inst/doc/HLAtools.html
d5ed72e117a4f5ad69023daec6f6f85d *man/BDstrat.Rd
de16b9ba9f380b7386b408c6346d49e2 *man/BDtoPyPop.Rd
df240edc9f349c7fb72ca0736d88c461 *man/GIANT.Rd
41ff16626b359d697f4b88a90a9f60cf *man/GLSC.ex.Rd
a1b3a82ddc52a9f7bf3caabab8a5f3a2 *man/GLStoUNI.Rd
96e06ce9f102659ffbe8f63dc1267207 *man/GLV.Rd
521a70b5ba98ee7059facc1bfdd7aca1 *man/GLV2.Rd
0af7cf3c06bc0550c66018a5c22b6ede *man/GLVhelper.Rd
2695cdd7da22377145e7bf1a5cedbf26 *man/GLstring.ex.Rd
a36e0ef29c6ed704bc7de384572d8473 *man/GLtoUN.Rd
7b155df243d7a7f2f473d2938133c308 *man/GLupdate.Rd
4124fd9a9463073ac1d486065eae6dd8 *man/GLvalidate.Rd
b6039cbf4b64b11c5ebdb5a6cb6774af *man/HLAatlas.Rd
ab9b242291cc848490c9e20d953e3236 *man/HLAgazetteer.Rd
dec23020023d832992e39da0a53dc29c *man/IMGTGenomicReferences.Rd
9a7d050530e5296e397b12e5d3b3ff39 *man/IMGTHLAGeneTypes.Rd
f21813133830fb6c74680b87974a8e74 *man/UNIFORMAT.example.Rd
8ed4014c9560ce54a86c6d6ed2028e63 *man/UNItoGLS.Rd
b242556fadbd6ad11a847bac6aeb5608 *man/UNtoGL.Rd
bb20ceb7e8024b3227ce9e16d3067220 *man/addCodonLine.Rd
f39cd5b1a2ae5a272d0eb47fae0569ca *man/alignmentFull.Rd
adc058721d2418d995966250a43db89d *man/alignmentSearch.Rd
9da6a63d5a51b772acb5f158d0527ed5 *man/alleleListHistory.Rd
7b20c0b5202e237ad4ce77987dd2a6a8 *man/alleleTrim.Rd
74fab9faae8ff803186127bb468ec350 *man/atlasFull.Rd
23e5f50119412413ac45c1b082d69ad5 *man/atlasMaker.Rd
a8886e23925a7cd543c6268a76e8e59d *man/buildAlignments.Rd
9a1bdf41ab4be9008637e15e8f41a984 *man/buildGazetteer.Rd
22a0d6ffcd202960b5ec49b57bfd4d38 *man/buildGenomicReferences.Rd
c6afb527f8f935a6112e0c49c0de61c2 *man/buildIMGTHLAGeneTypes.Rd
8d3557af79e05a5e696dc00da6544871 *man/checkAlignType.Rd
4cb50285c5dfe48471768669f26e0e8a *man/checkSource.Rd
21e6d80378c54fc6a3b5cc6162cb51cb *man/checkVersion.Rd
ab328484ce60c9fb51f9831f966c5faf *man/checkgDNAstart.Rd
2f3cba7ca21808a962b99422aa994730 *man/compareSequences.Rd
379d63c895a90c3cb9e957d1063262e2 *man/convertAny.Rd
4a603ba5f38d5d5a05b0b599577e0680 *man/countSpaces.Rd
4e308c839ed7021aa56685a8202e89fb *man/customAlign.Rd
14e32623092fc8503188ebf5ba9f8fdd *man/expandVersion.Rd
b0c3060468c92e89db4fcd34d79e1a00 *man/ffN.Rd
6eaa0cab69f5a1ed7ceb9bdd95a6cb93 *man/formatHead.Rd
221d00d466027a02a6c396ab5ea653f0 *man/fragmentFeatureNames.Rd
628b887fa158903e7659a52cfccc444d *man/getAlignmentNames.Rd
b1cbaf6affd2c9f3e0335baa5b431899 *man/getField.Rd
ea0cf46b836f32ead7d3dc1be93fd366 *man/getLatestVersion.Rd
5a72744a603cecfb08e2379092c6bb12 *man/motifMatch.Rd
ecdab256156f25b3033386764b45a04d *man/multiAlign.Rd
5c2e648797b7768da1d364270b4fe82c *man/multiAlleleTrim.Rd
346b80d2da26416b73e0d7309a6fcecf *man/multiGLStoUNI.Rd
fe13b11a114db670eacd282b510fe436 *man/multiLocusValidation.Rd
a4e602a62f1f3c3546a9e519247abad6 *man/multiQueryRelease.Rd
beefa086889d41e26fe2091157a93795 *man/multiSearch.Rd
d4fede67878879822c3ae895fb13c47b *man/multiTranslateGLstring.Rd
f64bfe0ead678aae31d4ad0d075de683 *man/multiUNItoGLS.Rd
29fff8ad49da3210209f8dd5fe545991 *man/multiUpdateGL.Rd
5885e7af6201ee78a4ffc125a76ec161 *man/numFields.Rd
ac5e3b41b4a5345524035de8f4d9a136 *man/parseAlignmentHead.Rd
a1621d1a24a04bb72ed32573a6bb5933 *man/posSort.Rd
bb8cc3c4ebf4f49ce49bc8ce3c73b302 *man/pypopHeaders.Rd
b8753a9605a3dbf11de15ad1a29ccd2f *man/queryPositions.Rd
1baa23e4a14cfaa21e15ab4ba8c04241 *man/queryRelease.Rd
cac467100a6f3e0197202fa91e1f0df3 *man/redec.Rd
c4d51cc93f9429c86b5dd4fd6ab5283c *man/relRisk.Rd
887d6c54e4beed89047743671030322f *man/repoVersion.Rd
1d4cdece918816f374c361900ee8524b *man/sHLAdata.Rd
ab2b2d15b0f82e2100488181894f9144 *man/squashVersion.Rd
76459de77c1e64d19d630fa5db2a7cd0 *man/translateAllele.Rd
fdf2e591f0c9d9a6fea5983e63b736ac *man/translateGLstring.Rd
2844055b2b578c0d765425e14056d89e *man/typeToSource.Rd
5e774d6ef33b5bd41f33ab813f7cdc14 *man/uniAlign.Rd
8c46f35549720b49cb0d7953e846456f *man/uniSearch.Rd
ea02e9f4bceef55e1c98a9579e8e73d7 *man/updateAll.Rd
9b758bc621fe9a98c8c65e130617242d *man/updateAlleleListHistory.Rd
025db950d22f14259a24f85cb60106bd *man/updateGL.Rd
8857e265ef5e18e43f48419ec3661b59 *man/validateAllele.Rd
2e2bec1f8da1679af6f292f607d2fa1b *man/validateGLstring.Rd
90802011518cbf5bd02d1c1f5b7fa0e0 *man/validateLocus.Rd
8ffa6a67b887a92aa0a7be6c7c3f1cd2 *man/validateMotif.Rd
308ed84070083c24e503d77b950fb319 *man/validatePositions.Rd
2cd390213bf65fa0ff8af0ac25c56419 *man/validateUniformat.Rd
e7ed97218d5649d64b7e61151639a8f4 *man/validateVersion.Rd
e347561104eca2fda24dc24db0335c45 *man/variantTable.Rd
e38efd68f54df57c45223f3c4e595c1c *man/verifyAllele.Rd
4d5e2dfd06b85b8d65626defdca3094d *vignettes/HLAtools.Rmd
