Package: sybil
Type: Package
Title: SyBiL - Efficient constrained based modelling in R
Version: 1.0.2
Date: 2012-04-20
Authors@R: c(person("Gabriel", "Gelius-Dietrich", role = "cre", email =
        "geliudie@uni-duesseldorf.de"), person("C. Jonathan",
        "Fritzemeier", role = "ctb"), person("Rajen", "Piernikarczyk",
        role = "ctb"), person("Benjamin", "Braasch", role = "ctb"))
Depends: R (>= 2.12.0), Matrix (>= 1.0-4), methods
Suggests: glpkAPI (>= 1.2.1), cplexAPI (>= 1.2.1), clpAPI (>= 1.2.0),
        lpSolveAPI (>= 5.5.2.0), parallel, multicore, grid, lattice
Description: The package SyBiL is a Systems Biology Library for R,
        implementing algorithms for constraint based analyses of
        metabolic networks (e.g. flux-balance analysis (FBA), linera
        MOMA, robustness analysis and flux variability analysis).
URL: http://www.cs.uni-duesseldorf.de/AG/BI/Software/SyBiL
License: GPL-3
Collate: generics.R validmodelorg.R validoptsol.R validreactId.R
        modelorgClass.R modelorg_irrevClass.R optObjClass.R
        optObj_clpClass.R optObj_cplexClass.R optObj_glpkClass.R
        optObj_lpSolveAPIClass.R sybilErrorClass.R ppProcClass.R
        fluxDistributionClass.R reactIdClass.R optsolClass.R
        optsol_blockedReactClass.R optsol_simpleFBAClass.R
        optsol_fluxVarClass.R optsol_fluxdelClass.R
        optsol_robAnaClass.R optsol_genedelClass.R
        optsol_doublefluxdelClass.R optsol_doublegenedelClass.R
        checksolClass.R sybilLogClass.R addReact.R addExchReact.R
        blockedReact.R bracket_pairs.R ceilValues.R changeBounds.R
        changeGPR.R changeObjFunc.R checkDefaultMethod.R checkOptSol.R
        checkReactId.R check_brackets.R createReactionString.R
        deadEndMetabolite.R doInRound.R doubleFluxDel.R doubleGeneDel.R
        doubleReact.R findExchReact.R floorValues.R fluxVar.R geneDel.R
        geneDeletion.R mod2irrev.R modelorg2text.R modelorg2tsv.R
        multiDel.R oneFluxDel.R oneGeneDel.R onlyChangeGPR.R
        onlyCheckGPR.R optObj_basicfunc.R optObj_lpSolveAPIcompat.R
        optimizer.R parseBoolean.R ppProcessing.R prepProbObj.R
        prepareSubSysMatrix.R printLogComment.R printNamedList.R
        printObjFunc.R progress.R readTEXTmod.R readTSVmod.R
        reassignFwBwMatch.R rmReact.R robAna.R settings.R simpleFBA.R
        singletonMetabolite.R sybilStack.R ypd.R zzz.R
Packaged: 2012-04-20 10:55:44 UTC; gabriel
Author: Gabriel Gelius-Dietrich [cre], C. Jonathan Fritzemeier [ctb],
        Rajen Piernikarczyk [ctb], Benjamin Braasch [ctb]
Maintainer: Gabriel Gelius-Dietrich <geliudie@uni-duesseldorf.de>
Repository: CRAN
Date/Publication: 2012-04-20 16:07:48
