7df945cee14f9d8afbb2b6fe0cd524e0 *DESCRIPTION
c48ee1d399c46d587b9ce78b93e6ff36 *NAMESPACE
1fda861bfb349c2dfa514ed6da31058c *NEWS.md
9c3e266b34ddef13ddad69457866fd4e *R/IBDprob.R
c5463254fb3df80c1b3dd0de0175b96c *R/RcppExports.R
bfcceea6945336efcc89c63301762acb *R/allGenoPlot.R
abbf4e85c863a4d4c427a7bc70d07eea *R/getProbs.R
ecd3e6a96971b31de7ce6b702db2674b *R/meanProbsPlot.R
02d10a597eb362447d280a28710c8581 *R/pedPlot.R
2735099643afdcff4110f24b7760eac0 *R/readIBDs.R
e9bbe48cfd5b39892c242bd148cdf493 *R/readRABBIT.R
974ead30915a7af40a2cfc15dcdca28a *R/reexport.R
495636bbf211b44088dc39e2e0bb2955 *R/singleGenoPlot.R
cfaac326698d6fbb34a4feb63e89a792 *R/statgenIBD.R
8452773eef75888d8cdfefd4ca4a59c6 *R/totalCoveragePlot.R
fc3ad8e35a50c7b94ef1eaeaabaa983f *R/utils.R
4c35ce95704832d523ae3f6bb075e536 *R/writeFlapjack.R
f93198e98648067bb95ba40c69fc12bd *R/writeIBDs.R
f2cd2d044d828ad5bf57994f27c9e1e3 *R/zzz.R
e9fe2eb94a3b131ded709f7225286d8d *README.md
1dda19015f0aa969acee990c150e3ac9 *build/partial.rdb
95e61b133138e978053f252908f1c4cd *build/vignette.rds
f3890ffa98cf5516421a5ed09a2b14c2 *cleanup
376fbb7f0ecd6f8f2d2eb3bcaed8c156 *inst/doc/IBDCalculations.R
6594b25bc91faf9cffa7b4ada2115c96 *inst/doc/IBDCalculations.Rmd
6016eb24c773011ea6678099947bb2de *inst/doc/IBDCalculations.html
050b0da0a35b70b7f2686caa1d436774 *inst/doc/IBDFileFormat.R
13336322ea8c7670b5694e2d03271493 *inst/doc/IBDFileFormat.Rmd
9fb8f3663c1019a304adb24f5bcda8ca *inst/doc/IBDFileFormat.html
fde3a6cf9efea6888862e4c963cc5514 *inst/extdata/SxM/SxM_IBDs.txt
748ebe3ce7bf92423860c1f4618ebdee *inst/extdata/SxM/SxM_eval.txt
2038f5a11a102fbabbfb2a9de6807556 *inst/extdata/SxM/SxM_geno.txt
f1fd473d3147b6a0e77ef9f362889e8b *inst/extdata/SxM/SxM_map.txt
8f9a4bee07e098e636eae83ebf731642 *inst/extdata/SxM/SxM_pheno.csv
9cc974e883d7a16c79a76f352038fc39 *inst/extdata/barley/barley_magicReconstruct.zip
2f75e4ca961caf23c554807e10a8c39b *inst/extdata/barley/barley_pedInfo.csv
4dd32524c457c265dd6e7c9570dd5e2c *inst/extdata/multipop/AxB.txt
57838653bfc2b65efdf458a600f93b46 *inst/extdata/multipop/AxC.txt
44e3415b4a9991be9e6a7fcde86cb48f *inst/extdata/multipop/mapfile.txt
bc42a883ecd54025413aa35ed81a6cbb *inst/extdata/popC4S3/cross.txt
e57ee0922a83445457a5303c4e5ee813 *inst/extdata/popC4S3/mapfile.txt
c3479bc2fa6e16d64a344c8023b28aac *inst/extdata/popF4/cross.txt
e57ee0922a83445457a5303c4e5ee813 *inst/extdata/popF4/mapfile.txt
92dd2e7f50bb5879a9fd59006567910d *inst/tinytest/ABC_markers
052fc43efb920258fac8d1ca11b1dcd8 *inst/tinytest/AB_M1_1
0b316b3cd63a068056e1d223941276da *inst/tinytest/SxMIBD_evalDist
0b316b3cd63a068056e1d223941276da *inst/tinytest/SxMIBD_evalPos
08f4ea0fab6678c60999030ebe7a8c4a *inst/tinytest/SxMIBD_evalPosChr
d37eb29989c9e934535027076291cc2c *inst/tinytest/SxMIBD_map
5eae836b584291371b9445e1fab530ae *inst/tinytest/SxMIBD_markers
d37eb29989c9e934535027076291cc2c *inst/tinytest/SxMIBD_pedigree
02f2995238f75e509daab88fba75ea13 *inst/tinytest/example_magicreconstruct_ancestry.csv.gz
38562557eab71a1c6752227df1932987 *inst/tinytest/example_ped.csv
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popBC1S2/map.txt
6d5a946db7ec1e24c5816c4c91a38b55 *inst/tinytest/popBC1S2/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popBC1S2DH/map.txt
c36686106cc58d3473d1ffc8a9572454 *inst/tinytest/popBC1S2DH/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popBC3/map.txt
5a240d3eb518e694f533ae60e543bb0e *inst/tinytest/popBC3/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popBC3DH/map.txt
e8abc9454aaa9a52fb9ecae4b2e12e93 *inst/tinytest/popBC3DH/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popC3/map.txt
8ebe39e74e3b8683c920ee7e742f1f47 *inst/tinytest/popC3/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popC3DH/map.txt
34813be7941e513dc78f85cb55355aa2 *inst/tinytest/popC3DH/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popC3S4/map.txt
64c941799668a926c59662f97a501847 *inst/tinytest/popC3S4/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popC3S4DH/map.txt
47c659356c6ab6d97bf9de3c00ba1b88 *inst/tinytest/popC3S4DH/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popC4/map.txt
f4dda11fafca9648878da62f44240adb *inst/tinytest/popC4/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popC4DH/map.txt
2505815d573b3294d722361dd07f4c34 *inst/tinytest/popC4DH/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popC4S3/map.txt
3d58a5a9c23564fcc2c701d02af8e45e *inst/tinytest/popC4S3/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popC4S3DH/map.txt
47120935f8944ecfcb5867aac71e2c71 *inst/tinytest/popC4S3DH/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popDH/map.txt
b9bc63dd235f6fe3f0baabe000d8d126 *inst/tinytest/popDH/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popF4/map.txt
e8979e42e80b2b11abe0151481249231 *inst/tinytest/popF4/markers.txt
fd61299e2781b62704bee264d1af2c23 *inst/tinytest/popF4DH/map.txt
29a484badb6c7244df2a007ae6e1e0c8 *inst/tinytest/popF4DH/markers.txt
62fd2da32186629d326543e8442e54a5 *inst/tinytest/test_IBDprob.R
c66981901c57882bd370abe20ceba34f *inst/tinytest/test_c.R
2badf857efc13719bedd790da8a77f9b *inst/tinytest/test_calcIBD.R
cdfdc89bed52fca6e19dc88ad624b9b9 *inst/tinytest/test_getProbs.R
9282298f381943e04c1bc1f55205ff49 *inst/tinytest/test_readIBDs.R
79886e6587f6ed7ff71c0e057d95fce9 *inst/tinytest/test_readRABBIT.R
d0081008a5aefd1da45b201584e8e5fc *inst/tinytest/test_writeFlapjack.R
9125a3c2f5518b784c8f7e57ed00dd5d *inst/tinytest/test_writeIBDs.R
b245fb2d591585af668846c616325a0b *man/allGenoPlot.Rd
95926030fefe11967c637588e88014b4 *man/c.IBDprob.Rd
3ae349c2ef65c340596e79ccc31e3666 *man/calcIBD.Rd
3f766c842c561d2596831d93a0ca28cf *man/figures/logo.png
0cc88e7a4ec6c1d1702a701642ed4132 *man/getProbs.Rd
af568aba7ab85bbfeeab43ce6a24e49a *man/pedPlot.Rd
20b2ddc1dfa7035545adf18e167c42be *man/plot.IBDprob.Rd
bde09461201e365c5c829bcfa0295a7f *man/readIBDs.Rd
2406fe009f61a5a6d2a19ff1a6fbb0e7 *man/readRABBIT.Rd
f12eb8d603acef643d56b89fd0129a57 *man/singleGenoPlot.Rd
6611f5ebad7d623eb1b4101905ba0583 *man/statgenIBD-package.Rd
8b5536673bbe5e1500168a2c6d97a12b *man/summary.IBDprob.Rd
937e263b92bf77a0fdf6be9a289125b5 *man/writeFlapjack.Rd
3fe012c809fe08c27c67a90a408b6935 *man/writeIBDs.Rd
27db97d261773838b5c1ef6017688808 *src/Makevars
284ad99621778641d35966f098e10ef5 *src/RcppExports.cpp
93ea4928ce61032280aacd795460d2e8 *src/calcIBD.cpp
c58b34916c6a36ce1f940feb30829313 *src/general/HMMalgo.cpp
c8a368d16502c9b5f403d52640ed4fcb *src/general/HMMalgo.h
c4bdb5caba1e650ced61494b04c49be5 *src/general/InhVector.cpp
160acd8b6fc16b6a42e8e60d0c8bc521 *src/general/InhVector.h
18f4b020e902addb7d7c61f58cc5038a *src/general/OrdGeno.cpp
155391c2a9cfc89d130c713bdb5bb9e6 *src/general/OrdGeno.h
f5a9d9271a847b3d1a290b529df1cce1 *src/general/TransMatSym2D.cpp
def87bb01fc92121101ccfa5a8ae2986 *src/general/TransMatSym2D.h
051fa8613e617d3f66f7c67c1d0dab99 *src/general/convert.h
fbc03154e1a2ff3346f020b1ea6ee04e *src/general/ibdexcept.cpp
9b8c3cac7ba5863d55b499e821c14f4a *src/general/ibdexcept.h
d812370569c1e0468463c5bd743b2fbe *src/general/matvec.h
204ae61030b9ed240ff75b0d3e4164ad *src/general/misc.cpp
1080ebd0b24e50f4794de91abc41b7eb *src/general/misc.h
3dd298056038d4b9c49ce38855a59b75 *src/general/util_genetics.cpp
f17535cb2951fb1d3c8826243a59acca *src/general/util_genetics.h
c47111267a0ff5b3f8a9199e78eff63b *src/pedigree/Loc.cpp
d9ebb27d48bf051863d08679307e9dd6 *src/pedigree/Loc.h
f386dd4f3d9ec253eb166d9da81d643f *src/pedigree/analysis_fam.cpp
87533005444d274d14fd25569f0e141d *src/pedigree/analysis_fam.h
c1ae51cf942cd1c648b1340d4813dd0a *src/pedigree/crosses.cpp
c3175b36e1fc4c7475051d7cf1aeb86a *src/pedigree/crosses.h
3a49e474a5d46ff2dc6ee83d17c3c382 *src/pedigree/mainR.cpp
603cc9a5bae7be64e3b73f62a2246a5b *src/pedigree/mainR.h
b537896608f3a6086e9083452f38e849 *src/pedigree/markerscore.cpp
99ca407f1edcd7c35794dcda87732a64 *src/pedigree/markerscore.h
6574cca1e683bb9ff5f36a6a8ea803b9 *src/pedigree/popt.cpp
783d828e2930334f916b35f7910f5631 *src/pedigree/popt.h
42d69396a9df9df40b75055e01754208 *src/pedigree/read_map.cpp
7f8f6dea744a667f6685a32c5632a65f *src/pedigree/read_map.h
17bbc7b0998cac9a0144177c0dc0569f *tests/tinytest.R
6594b25bc91faf9cffa7b4ada2115c96 *vignettes/IBDCalculations.Rmd
13336322ea8c7670b5694e2d03271493 *vignettes/IBDFileFormat.Rmd
1308659265e2eb087728ec1358dbcfe1 *vignettes/SxM_flapjack.png
bbd4992be2b631400f23e250aa8b412c *vignettes/bibliography.bib
