--------------------------------------------------------------------------------
scape 2.3-1 (2017-06-20)
--------------------------------------------------------------------------------
o Added function importADCAM() to import results from ADCAM-type models.

o Added example object x.saithe.

o Hardwired stringsAsFactors=FALSE in importCol() and removed '...' argument.

o User can pass a data frame as the main argument to functions, instead of a
  scape object.




--------------------------------------------------------------------------------
scape 2.2-0 (2014-03-11)
--------------------------------------------------------------------------------
o Package loads quietly, thanks to explicit namespace handling.

o Added functions importMCMC() and importProj() to import MCMC results from
  Coleraine. These functions were a part of the "scapeMCMC" package, which has
  now been renamed to "plotMCMC" and no longer contains Coleraine-specific
  functions.

o Removed argument 'info' from importCol().

o Improved plotCA() and plotCL() handling of NA data values.




--------------------------------------------------------------------------------
scape 2.1-0 (2011-04-28)
--------------------------------------------------------------------------------
o Added argument 'swap' to plotCA(), plotCL(), and plotN().

o Added argument 'strip' to plotCA(), plotCL(), plotIndex(), plotLA(), plotN(),
  and plotSel().

o Added type "l"[ast year] to plotN().

o Improved type "r"[ecruitment] plotN(), so age at recruitment is no longer
  hardwired as 1.




--------------------------------------------------------------------------------
scape 2.0-2 (2011-02-09)
--------------------------------------------------------------------------------
o No user-visible changes.




--------------------------------------------------------------------------------
scape 2.0-1 (2010-09-13)
--------------------------------------------------------------------------------
o Improved scape-package help page.




--------------------------------------------------------------------------------
scape 2.0-0 (2010-09-12)
--------------------------------------------------------------------------------
o Added suite of functions to diagnose sigmas and sample sizes: estN(),
  estN.int(), estSigmaI(), estSigmaR(), getN(), getSigmaI(), getSigmaR(), and
  iterate().

o Fixed missing error bars in plotIndex, by reestablishing Hmisc dependency.




--------------------------------------------------------------------------------
scape 1.1-5 (2010-09-03)
--------------------------------------------------------------------------------
o Improved handling of character/factor/integer in plotting functions.

o Improved importCol() so that Year column is integer, not double.




--------------------------------------------------------------------------------
scape 1.1-4 (2010-09-02)
--------------------------------------------------------------------------------
o Minor improvements in help pages.




--------------------------------------------------------------------------------
scape 1.1-2 (2010-09-01)
--------------------------------------------------------------------------------
o Added argument '...' to importCol(), e.g. to pass stringsAsFactors=FALSE.

o Example objects x.cod, x.ling, x.oreo, and x.sbw have character instead of
  factor columns.




--------------------------------------------------------------------------------
scape 1.1-0 (2010-08-31)
--------------------------------------------------------------------------------
o Changed default value of 'what' in plotIndex() to "s" (survey biomass index).

o Added argument 'col.strip' to plotCA(), plotCL(), plotIndex(), plotLA(),
  plotN(), and plotSel(), with gray as default.

o Reduced clutter during startup, by importing Hmisc and suggesting gdata.

o Added three vignettes: dsc-vignette.pdf, gallery.pdf, and mymodel.pdf.




--------------------------------------------------------------------------------
scape 1.0-9 (2009-04-20)
--------------------------------------------------------------------------------
o No user-visible changes.




--------------------------------------------------------------------------------
scape 1.0-8 (2007-09-29)
--------------------------------------------------------------------------------
o Added argument 'col.points' to plotN().




--------------------------------------------------------------------------------
scape 1.0-7 (2005-10-24)
--------------------------------------------------------------------------------
o Fixed plotIndex() so it returns trellis object or data frame, as documented.




--------------------------------------------------------------------------------
scape 1.0-6 (2005-10-19)
--------------------------------------------------------------------------------
o Improved help pages.




--------------------------------------------------------------------------------
scape 1.0-5 (2005-10-18)
--------------------------------------------------------------------------------
o Added help page for scape-package.

o Renamed importRes() to importCol().

o Renamed plot*() arguments: 'log.transform'->'log', 'base.log'->'base', and
  'plot.it'->'plot'.

o Improved plotIndex() and plotLA() so default y-axis limits extend 4% beyond
  data extremes, except lower limit is zero when values are not log-transformed.




--------------------------------------------------------------------------------
scape 1.0-4 (2005-09-02)
--------------------------------------------------------------------------------
o Fixed documentation for plotN() argument 'axes'.




--------------------------------------------------------------------------------
scape 1.0-3 (2005-09-01)
--------------------------------------------------------------------------------
o Fixed importRes() example.




--------------------------------------------------------------------------------
scape 1.0-2 (2005-08-28)
--------------------------------------------------------------------------------
o Fixed discrepancy between default argument values in functions and help pages.




--------------------------------------------------------------------------------
scape 1.0-1 (2005-08-26)
--------------------------------------------------------------------------------
o Removed redundant argument 'fitted.also' from plotIndex(). User can pass
  lty.lines=0 to suppress fitted lines.

o Renamed argument 'fitted.also' to 'fit' in plotCA() and plotCL().




--------------------------------------------------------------------------------
scape 1.0-0 (2005-08-25)
--------------------------------------------------------------------------------
o Standardized and vectorized graphical arguments further.

o Submitted to CRAN.




--------------------------------------------------------------------------------
scape 0.2-2 (2005-08-24)
--------------------------------------------------------------------------------
o Added help pages for all functions.

o Improved importRes() so both survey and commercial selectivity are imported.

o Renamed Survey and Gear columns to Series, in scape elements CAc, CAs, CLc,
  CLs, and Sel.

o Changed plotCA() and plotCL() so they assume what="s" was intended if what="c"
  failed.

o Added argument 'together' to plotSel() to plot gears in one panel.

o Standardized graphical arguments further between plot functions.




--------------------------------------------------------------------------------
scape 0.2-1 (2005-08-17)
--------------------------------------------------------------------------------
o Added argument 'cex.legend' to plotB() to set legend text size.

o Added argument 'ratio.bars' to plotN() to set bar width in barplots.

o Improved tutorial by adding DSC proceedings paper.




--------------------------------------------------------------------------------
scape 0.2-0 (2005-08-10)
--------------------------------------------------------------------------------
o Added function plotB() to plot biomass trajectories, landings, and stock
  recruitment.

o Changed plotCA(), plotCL(), and plotIndex() so first series is plotted by
  default.

o Added argument 'together' to plotLA() to plot both sexes in one panel.

o Changed importRes() so imported Coleraine models have attributes call=[call]
  and scape.version=[version]. The info attribute is now empty quotes.

o Changed importRes() to CPUE data are imported without a Gear column. Series
  name can contain the gear name if the user wishes.

o Renamed scape element B column Years to Year.

o Changed graphical arguments in all plot functions, to simplify and
  standardize.

o Updated x.ling and ling.res to a newer version of Coleraine.




--------------------------------------------------------------------------------
scape 0.1-7 (2004-11-09)
--------------------------------------------------------------------------------
o Added function plotIndex(), making plotCPUE() and plotSurvey() obsolete.

o Improved importRes() to support gear-specific vulnerable biomass, and label
  annual Dev elements with years instead of cohorts.

o Improved x.ling so it does not contain CLs element, since survey
  catch-at-length data were not used in that assessment.




--------------------------------------------------------------------------------
scape 0.1-6 (2004-07-26)
--------------------------------------------------------------------------------
o Renamed plotSelMat() to plotSel(), and added support for gear-specific plots.

o Renamed scape element SelMat to Sel, with a new Gear column.

o Improved importRes() so CPUE element will not contain empty Gear:Series
  combinations.

o Added example object x.ling and example Coleraine file ling.res.




--------------------------------------------------------------------------------
scape 0.1-5 (2004-05-24)
--------------------------------------------------------------------------------
o  Updated tutorial.

o  Improved plotCPUE() and plotSurvey() multipanel layout control, using
   'as.table' instead of 'rev.series'.

o  Improved plotCPUE() and plotSurvey() grid lines at low values.




--------------------------------------------------------------------------------
scape 0.1-4 (2004-05-23)
--------------------------------------------------------------------------------
o Renamed argument 'div' to 'q' in plotCPUE() and plotSurvey() to clarify its
  purpose.

o Improved plotCPUE() and plotSurvey() so internal arguments 'yobs' and 'yfit'
  do not cause a conflict with top-level argument abbreviation 'fit'.

o Changed plotSelMat() so default cex.points=1.

o Improved importRes() so needless warnings are suppressed.

o Improved plotCPUE() and plotSurvey() so strip labels are more informative.

o Added argument 'fitted.also' to plotCPUE(), plotLA(), and plotSurvey().

o Improved importRes() so it looks for correctly spelled Number_of_survey_C@A
  flag.

o Improved x.cod so it contains CAs element.

o Updated tutorial.

o Improved importRes() so maturity is calculated without NaN values.




--------------------------------------------------------------------------------
scape 0.1-3 (2004-05-19)
--------------------------------------------------------------------------------
o Updated tutorial.




--------------------------------------------------------------------------------
scape 0.1-2 (2004-05-18)
--------------------------------------------------------------------------------
o Added tutorial.

o Added example Coleraine files cod.res, l_at_age.txt, oreo.res, oreo.txt, and
  sbw.res.

o Improved plotN() to draw smarter y axis.

o Changed importRes() so imported Coleraine models have attributes class="scape"
  and info=[path].

o Removed functions importCor(), plotB(), and plotPearsonCLc().




--------------------------------------------------------------------------------
scape 0.1-1 (2004-05-12)
--------------------------------------------------------------------------------
o Added example objects x.cod, x.oreo, and x.sbw.




--------------------------------------------------------------------------------
scape 0.1-0 (2004-05-11)
--------------------------------------------------------------------------------
o Added functions importCor(), importRes(), plotB(), plotCA(), plotCL(),
  plotCPUE(), plotLA(), plotN(), plotPearsonCLc(), plotSelMat(), and
  plotSurvey().
