7e1eb1bb2b1bedaabed18ac2d25d8c7d *DESCRIPTION
111886ab128f53442984fadcd3c5d6b9 *NAMESPACE
d5d841539e32c12e0a094fa9ddfbb4ca *NEWS.md
5ac8cd37e0e6461ee5f796695f3a1479 *R/Color_Palettes.R
ad3e82b561436d895e47cfcfca1169e4 *R/Data.R
10e79a382c9d0f2644f9c26c6827790c *R/Deprecated.R
82712528a7834beef5114b6aa4f0a0b3 *R/Generics.R
a2511c57ca8dfa480c15ea80779e122d *R/Internal_Utilities.R
589bc1fa5fc371405d7034c8f826b9c0 *R/LIGER_Plotting.R
bb2d97d916e31187ef758c4a2fa855e9 *R/LIGER_Utilities.R
e3395834b28d05024302d0111b22c33a *R/Nebulosa_Plotting.R
6573c7c22c369fa645cf790ff8e310a9 *R/Object_Conversion.R
12ecd03f8ce48e700948cbe774916269 *R/Object_Utilities.R
55ada4a67360e2dbc178cdd00baa221e *R/Plotting_Utilities.R
017ef42a080da0048e2851caebffc387 *R/QC_Plotting_Seq_10X.R
1e82de2355431314d6280517da4ba574 *R/QC_Plotting_Seurat.R
a85b999f9e334b340d91903bf6abfc53 *R/Read_&_Write_Data.R
5bbd5e9f33e53fe113c7c90c7e6ec1a5 *R/Reexports.R
7f33fe6d43cb148b6478eacd2f514582 *R/Seurat_Iterative_Plotting.R
a5f191ea30fa87d04f5729de8f7494ce *R/Seurat_Plotting.R
e0d6c5fb7e81dbe545b9049e111d8cf5 *R/Statistics.R
08410e96bc85e88b1d5d1827b664ec89 *R/Statistics_Plotting.R
85c8209f68f0301d6f2c79f688f20e0b *R/Utilities.R
09b6c6a2c41abe28d2c76640fbfeba07 *R/sysdata.rda
c9ca45c88820426c18e30f472a6f72c3 *R/zzz.R
c71ac3b5c11a3ece6908e0108b760420 *README.md
8faf250d78a120ba4c7ea2186efddd24 *build/partial.rdb
6aa796b47c4b2972460708a3b8ef730c *data/ensembl_mito_id.rda
51c90f833a7b5cb53fc9b18b79269379 *data/ensembl_ribo_id.rda
0422018fe0ddf16e4c26c18ad54fb853 *data/ieg_gene_list.rda
d8f28c13c63a10480ad2352f99a72d1a *data/msigdb_qc_gene_list.rda
47716bedabaf0f277c1f75e84e8012c9 *man/Add_Alt_Feature_ID.Rd
055649c96ba8f5371930800e50d8c412 *man/Add_CellBender_Diff.Rd
7d75881f83cc26c579e1dccbf529b6e2 *man/Add_Cell_Complexity.Rd
079d9444388624ef96b00a32cb39cfc5 *man/Add_Cell_QC_Metrics.Rd
ac999bd0f29dd725f0ecfb3291d23df5 *man/Add_Mito_Ribo.Rd
386aa2b41f86df8c36d90c90238e86e9 *man/Add_Pct_Diff.Rd
fcd363ba5686a5cdc0200ef6bc68b7a2 *man/Add_Sample_Meta.Rd
77342a3ba8fff767d2a7cab4eca7b2ab *man/Add_Top_Gene_Pct_Seurat.Rd
75af21236513d9e5d1438cb814f803bf *man/Barcode_Plot.Rd
6dcc84f76eb6b50facc04939fc74050c *man/Blank_Theme.Rd
fc7a6b66a0bad2d4696e3d36ee66cc8f *man/Case_Check.Rd
a8c9ffe2874563999db5485b470dc073 *man/CellBender_Diff_Plot.Rd
2a754c594493a6fb81a1ca7d1e1ad7e4 *man/CellBender_Feature_Diff.Rd
444fb25b84c7fda839d2602f8ddae971 *man/Cell_Highlight_Plot.Rd
867551d884003de03c9a779148180e0b *man/Change_Delim_All.Rd
841b85bbc5454ac481d7d3a8227ba7e3 *man/Change_Delim_Prefix.Rd
d3b22352cacba30dc5b7e1b30cb3d7c6 *man/Change_Delim_Suffix.Rd
22b92db181957639c2d0740aed0e661c *man/CheckMatrix_scCustom.Rd
aca668e85eabcdd8336d327786000a42 *man/Cluster_Highlight_Plot.Rd
d1d41a990f061d3a59ca7ce3ebf20963 *man/Cluster_Stats_All_Samples.Rd
aab4381ab3259920e143b230afb8cf8d *man/Clustered_DotPlot.Rd
4e9707017115bd0cb9de62caf9a74d9e *man/ColorBlind_Pal.Rd
8f65d60d4376aed71c3204b13fb73df6 *man/Convert_Assay.Rd
610dc1172947b63d565ab15f11ec88c9 *man/Copy_From_GCP.Rd
bdf0fa5cee1055da1e29abb6a5a06175 *man/Copy_To_GCP.Rd
da7003d76ce94052e98ae2621617ff5d *man/Create_10X_H5.Rd
0629a43baf43a8c1d40b52d9caee4319 *man/Create_CellBender_Merged_Seurat.Rd
cff1ab45e7f772909f7823a4070e162e *man/Create_Cluster_Annotation_File.Rd
16b427b0ec8c0c25d71666ee681dbd39 *man/Dark2_Pal.Rd
2213dcd3af9bfa53e3fbf458030780b1 *man/DimPlot_All_Samples.Rd
3314d86ab40b9ed5d138f44f6c7f2b00 *man/DimPlot_LIGER.Rd
19fa9e2150beba9710d81c66b82ad1cf *man/DimPlot_scCustom.Rd
96c86d99bdd9b223e4b8dd6f71aa91f1 *man/DiscretePalette_scCustomize.Rd
b915ddee5973fd8c51124537be76d76e *man/DotPlot_scCustom.Rd
0dc1e32b30ce7d42a6ca03877140bc46 *man/Extract_Modality.Rd
9eaec8c19445dec9a519b27b2e2c9080 *man/Extract_Sample_Meta.Rd
db198370a5dc83531be1b76d38d671e5 *man/Extract_Top_Markers.Rd
3d5c5f8d71761d031321323de4f6e970 *man/FeaturePlot_DualAssay.Rd
90a2f91c4de716639077e51e1632c968 *man/FeaturePlot_scCustom.Rd
0919422ccd64b2bda3f58603f2952f63 *man/FeatureScatter_scCustom.Rd
099eb9bf63c76eae86a02773889ee9f8 *man/Feature_Present.Rd
ab8ad1955e2064e78a3cecadabbf30d6 *man/Fetch_Meta.Rd
2d95f234ff1c6c2a05dd7c61982753be *man/Gene_Present.Rd
9eb83769ab54014cf034f505b4706b8e *man/Hue_Pal.Rd
d70cbde01e72f608bc8e7b0a2b3f5e11 *man/Iterate_Barcode_Rank_Plot.Rd
732d502ddd15048bfae64bc83edbee8b *man/Iterate_Cluster_Highlight_Plot.Rd
13b7aa0c2bb6233ba878e9a7af399ee1 *man/Iterate_DimPlot_bySample.Rd
1976e71154e8b971f886b80d0acc0e4f *man/Iterate_FeaturePlot_scCustom.Rd
056aec43aa989330394d591033039a10 *man/Iterate_Meta_Highlight_Plot.Rd
d5a5d7ee7901005117e878aa01a90972 *man/Iterate_PC_Loading_Plots.Rd
efc91b66b25efe451440674aa275f7df *man/Iterate_Plot_Density_Custom.Rd
140957bd765c948919df345a623661af *man/Iterate_Plot_Density_Joint.Rd
45d153a99cd831a3c0d18f60332a6419 *man/Iterate_VlnPlot_scCustom.Rd
25492822787eab379b75fd8273ee114c *man/JCO_Four.Rd
2807adad50a610b0aa8f781e615bee1b *man/LIGER_Features.Rd
f965c1aff320a5d4d96913560f5a6564 *man/Liger_to_Seurat.Rd
8e034de4f4e2c7fc3056554950487b90 *man/MAD_Stats.Rd
9e055bdabd13c3dda645c60452fafb2f *man/Median_Stats.Rd
86fc6003aaa78a12904d6dafc8d1ee49 *man/Merge_Seurat_List.Rd
60801f2092b1ec88cd6517d8b87d1873 *man/Merge_Sparse_Data_All.Rd
1d5433fa697135356727c36281927374 *man/Merge_Sparse_Multimodal_All.Rd
7025c558d3a6bfe8759c4938fd00a705 *man/Meta_Highlight_Plot.Rd
fa7e4ed0873d81af0ced945f607db5ed *man/Meta_Numeric.Rd
c88f81bcdd692288036416e0d91b3e8d *man/Meta_Present.Rd
6468cc54669b310914e7e9f52a3726e9 *man/Meta_Remove_Seurat.Rd
2533f71bce7875afe78610ad7d765437 *man/Move_Legend.Rd
9f2da5c560720a5b3eb2cacaad14f555 *man/NavyAndOrange.Rd
2c069a03c7d34b1cfe2050728508082a *man/PC_Plotting.Rd
378640c65c625a65cbe2b5808e81ba59 *man/PalettePlot.Rd
433e76855e89e3aab9e642f2005d379d *man/Percent_Expressing.Rd
d8168bb6fb811d3b052a66e7d59b46d0 *man/Plot_Cells_per_Sample.Rd
d87022b1f1f929f572b0dd4c84044f15 *man/Plot_Density_Custom.Rd
365dbdd7d10781fa9dce6668a4501c4d *man/Plot_Density_Joint_Only.Rd
b9a167a7b0f18fc9bac81901a3021050 *man/Plot_Median_Genes.Rd
c10c88ff8c72bf200442be0f76d24963 *man/Plot_Median_Mito.Rd
1d29856b2d5b89288d19b942f252ec12 *man/Plot_Median_Other.Rd
a8f88d7b76b96f679aa5d6fba7ea1da8 *man/Plot_Median_UMIs.Rd
3adb235cad459d0089a822d318c8a65b *man/Pull_Cluster_Annotation.Rd
5b0b32e17aba6c30bef8cf6620611c76 *man/Pull_Directory_List.Rd
0fd57cc94f42265954c429c1f0a012c9 *man/QC_Histogram.Rd
ab26851d8044b2f437fd2028053c0a03 *man/QC_Plot_GenevsFeature.Rd
86d1ba3a8f2258817f8555d49c0398b0 *man/QC_Plot_UMIvsFeature.Rd
2791bd34418e214c169d514f9f66381e *man/QC_Plot_UMIvsGene.Rd
cc26cd5162e3b6f00abccf86bac627d9 *man/QC_Plots_Combined_Vln.Rd
3f2266145f8f0294088f7f7e96152ecf *man/QC_Plots_Complexity.Rd
5cb0c4b17df047a58809bc41af9c267e *man/QC_Plots_Feature.Rd
a223a6c6515842d15e197db3a9cac502 *man/QC_Plots_Genes.Rd
5837ede209c21dfa4896653572339285 *man/QC_Plots_Mito.Rd
770661c4e152b99c216423add3535d69 *man/QC_Plots_UMIs.Rd
76990acba92ca082a7cab0291aa81f75 *man/Read10X_GEO.Rd
48a3f6d7f13202891d0a907488d83a6d *man/Read10X_Multi_Directory.Rd
dca9b059dcd3b26fd00596b73e61d301 *man/Read10X_h5_GEO.Rd
92ae5b48f18c245e207a5201ce0e1bbb *man/Read10X_h5_Multi_Directory.Rd
943ec582d9987e12db9b23da16499a06 *man/Read_CellBender_h5_Mat.Rd
08bfed8afabac596f614559a21a7122f *man/Read_CellBender_h5_Multi_Directory.Rd
b488cdeaf23e90c967b88162f0120892 *man/Read_CellBender_h5_Multi_File.Rd
172b2391df73952ce44020cc6e5ec187 *man/Read_GEO_Delim.Rd
8899a97c508e8d98ba22f6a452eda3c9 *man/Read_Metrics_10X.Rd
f5704a988574057c860bd02cc76a23e8 *man/Reduction_Loading_Present.Rd
5bdf6ac4291a6c0cc9c89678fad80918 *man/Rename_Clusters.Rd
92d2336f641c397b1d76f61e40cdfc2a *man/Replace_Suffix.Rd
751977f17ec5f38ddfe3085a1da2086f *man/Seq_QC_Plot_Alignment_Combined.Rd
f810db193d02417cd3c3a369118bf62d *man/Seq_QC_Plot_Antisense.Rd
4116ef4032e98c6001f1cf72c213a5c2 *man/Seq_QC_Plot_Basic_Combined.Rd
8673ccbe34eb29002f6b1513a5aef119 *man/Seq_QC_Plot_Exonic.Rd
0aa9b1d3ad4d89febb1c7bf6af281cef *man/Seq_QC_Plot_Genes.Rd
27d95da54c14de0d4658dd23fdf411c9 *man/Seq_QC_Plot_Genome.Rd
cf1e2cf516645f65342a4f752d8b32ca *man/Seq_QC_Plot_Intergenic.Rd
cb2b81e3646e299a23c1b631d007aa10 *man/Seq_QC_Plot_Intronic.Rd
a02ae44d12f416897c34c05f220998f3 *man/Seq_QC_Plot_Number_Cells.Rd
1e18d5ede53e6504e4973268a9cb7676 *man/Seq_QC_Plot_Reads_in_Cells.Rd
bfdf23f0295c9a0f3bbc53c03ab32bd7 *man/Seq_QC_Plot_Reads_per_Cell.Rd
a2b05aeefba3485dfa8014e1c735557a *man/Seq_QC_Plot_Saturation.Rd
0a4b845e657b8d739a9e95c0d05d6127 *man/Seq_QC_Plot_Total_Genes.Rd
32d524bb47a35066301b698c2ec231b9 *man/Seq_QC_Plot_Transcriptome.Rd
09245a6e288a759d063a31b4ca6f6c71 *man/Seq_QC_Plot_UMIs.Rd
27f85b21f0514ade90ab02174d66f730 *man/Setup_scRNAseq_Project.Rd
6a69f7d94b4ea8fc763af1c7805560c8 *man/Single_Color_Palette.Rd
c41c4e648f40956a404c658ad555e224 *man/Split_Layers.Rd
336776bf61f4662104ee5914a6bceb1e *man/Split_Vector.Rd
c70ad5b0b1069571e3a2d04d2dcb9ea5 *man/Stacked_VlnPlot.Rd
54aecdc3d2d1f021e1afd1dd8f787add *man/Store_Misc_Info_Seurat.Rd
2cd4f64781c863454d387d7ddc85d05b *man/Store_Palette_Seurat.Rd
17e2807f15952874fef8ef1e8218c1a4 *man/Top_Genes_Factor.Rd
9d580e18d1bf857bcafbf28fc2b03a12 *man/UnRotate_X.Rd
3c0633bb589c739c4c89f270a2939674 *man/Updated_HGNC_Symbols.Rd
22450a436258489b95feedc62cda75ce *man/VariableFeaturePlot_scCustom.Rd
4dd0df9c2fc812341135152c7efdf597 *man/Variable_Features_ALL_LIGER.Rd
2d0f47fcdb00eb3093db3fe6efc48cdb *man/VlnPlot_scCustom.Rd
f54ecf237ea2add74c05dc09f23f2c1d *man/as.LIGER.Rd
e788c8c3929761dcda0fcccb8d8c1e18 *man/as.Seurat.Rd
a5c222b75f09a726f30855aff1836a58 *man/as.anndata.Rd
bc9c1baaa79d49d8a71d058fcbe27a87 *man/deprecated.Rd
00a3b0985cff9ffc5b8b6619ee029ed3 *man/ensembl_mito_id.Rd
311c03f55430a89f74b1d5f9f977c7e9 *man/ensembl_ribo_id.Rd
b3784210ac123217a2337e2cd85aaf36 *man/figures/assets/Iterate_named_plots.png
9d26f28851138a2dd4d347144b0ba6a9 *man/figures/assets/Read10X_GEO.png
9c4d1af808620624565ee9282cbf3d36 *man/figures/assets/annotation_info.png
6155efd44b2b5df1931fd1ecb85aada7 *man/figures/assets/delim_default.png
74bd1b192c5ea1c54b0532c08cc8bfba *man/figures/assets/geo_merged.png
34ec0322c66c0f6f77a68e5c046dbaec *man/figures/assets/multimodal.png
850bd9bad80d9e953b10932cba9dba05 *man/figures/assets/renamed.png
cb1e46f469cfbbbde29c8b5113e1d789 *man/figures/lifecycle-archived.svg
c0d2e5a54f1fa4ff02bf9533079dd1f7 *man/figures/lifecycle-defunct.svg
a1b8c987c676c16af790f563f96cbb1f *man/figures/lifecycle-deprecated.svg
c3978703d8f40f2679795335715e98f4 *man/figures/lifecycle-experimental.svg
952b59dc07b171b97d5d982924244f61 *man/figures/lifecycle-maturing.svg
27b879bf3677ea76e3991d56ab324081 *man/figures/lifecycle-questioning.svg
53b3f893324260b737b3c46ed2a0e643 *man/figures/lifecycle-stable.svg
1c1fe7a759b86dc6dbcbe7797ab8246c *man/figures/lifecycle-superseded.svg
2b7a6381b067a0c9f1f8e04f9d24027f *man/figures/scCustomize_Logo.svg
6c756f6c98b270a98093274d089facbf *man/ieg_gene_list.Rd
bcf8a62d5b3181d2cdfd29be8aa9e963 *man/msigdb_qc_gene_list.Rd
00b0ee1d91ec43fce48b8316a9e3ec2b *man/plotFactors_scCustom.Rd
b52293249afdadb41f6e80315776d964 *man/reexports.Rd
4c267ffec8c9163d4bf0080be8d242fa *man/scCustomize-package.Rd
f24d9402a39efbac1225078da9f4b9a3 *man/scCustomize_Palette.Rd
776b9756de24b367cf4db6f1a7be40d2 *man/theme_ggprism_mod.Rd
21b1f5a8af988f3644bb98e32373f2df *man/viridis_shortcut.Rd
