2b51bf419444df2cdb8f5cabc87d09f8 *DESCRIPTION
7d31f825f639610a73aced6acb74d9ef *LICENSE
f914203de1703d18927f9cde11ef7c30 *NAMESPACE
259daaac8fd1e6a23658bd7256361be6 *R/annotate_chain_name_and_isotype_name.R
497dd05954e733f3da772071558dff70 *R/calculate_IGH_isotype_proportion.R
2c8658aebf708c1b380e50d483e12943 *R/calibrate_proportion_by_clones.R
4ab7ff4b637bee93304385606b746622 *R/combine_all_sample_repertoire_metrics.R
b085519cb8d90fc10a3766b85929ada2 *R/compute_repertoire_metrics_by_chain_name.R
fa852559a95e2935d7dfff0f3891b9e1 *R/data.R
a13a44d4ffed6b575537ff4741d74f2d *R/format_clonotype_to_immunarch_style.R
27069326124185e4dd9b4d91a673dbdc *R/get_item_name_x_sample_name_for_each_metric.R
814688c1b6d5ad1b5d77653f90072f0a *R/globals.R
400d779290566bd16cd9915887ead983 *R/merge_convergent_clonotype.R
df6cc46bc7fae1a55b713f3d5065b35a *R/rTCRBCRr-package.R
ad5741b22072378d61d5a01b4320c095 *R/remove_nonproductive_CDR3aa.R
97b693ec7e5e4b073bf89016a92dfeb3 *README.md
49d9a41cbafe69001c8db5c0ca2d9b38 *build/vignette.rds
31279f7689b43d3a6df29ac155f5aa0e *data/all_sample_IGH_chain_all_metrics_wide_format_dataframe.rda
e8a9ec314807860e8b9414d17cf6d4d6 *data/all_sample_IGH_chain_all_metrics_wide_format_dataframe_list.rda
8cf9bc16e33513f33a39a0d39e6b0301 *data/all_sample_IGH_chain_individual_metrics_dataframe_list.rda
51693c44f625f6d5dd8603710b51f961 *data/all_sample_all_chain_all_metrics_wide_format_dataframe.rda
f29ec06b4228e1201f8c19fc022e643f *data/all_sample_all_chain_all_metrics_wide_format_dataframe_list.rda
1d6f46c4af105298f5c986f64eb44b05 *data/all_sample_all_chain_individual_metrics_dataframe_list.rda
5116f29e58e570a4f5f15daa5bb3702d *data/chain_separated_dataframe.rda
cc47ba8b12cfd34e7c975a318172934a *data/convergent_clonotype_merged_dataframe.rda
6eea562282f31aac94e11650e050d481 *data/immunarch_style_dataframe.rda
f68a1991c51f22c5132c897f0998813a *data/nonproductive_CDR3aa_removed_dataframe.rda
423cf16b93bad106e885a3c55be3f051 *data/raw_input_clonotype_dataframe.rda
efb3fd29f49c6dce261f816fe3524b18 *data/the_divergent_clonotype_dataframe_list.rda
95062b55eaf1623dbae6d6f6f171dfa1 *inst/doc/Quick_Start.R
daef36ba95520601a090f46d15357e42 *inst/doc/Quick_Start.Rmd
d073bffca271c651e6227aaa38b771f0 *inst/doc/Quick_Start.html
b2be4a06845c334cc3c540b1ed5d4ff8 *inst/extdata/mixcr/sample_01.tsv.bz2
aef003b90888951ee2ba00e85bf56017 *inst/extdata/mixcr/sample_02.tsv.bz2
5f299700a5554cd0e66dde8f9dc4f5c1 *inst/extdata/mixcr/sample_03.tsv.bz2
447b2c61f8b45fb658251bbf222dc947 *inst/extdata/trust/sample_01.tsv.bz2
d37e6b6475be6cdb5cffbb49c2513c7d *inst/extdata/trust/sample_02.tsv.bz2
e7ee033dedf65c9779fad795ab24065e *inst/extdata/trust/sample_03.tsv.bz2
f4538ead43035df08ff54f00a28116dd *man/all_sample_IGH_chain_all_metrics_wide_format_dataframe.Rd
0428c1b86f6c8a7b85b9333b1c41939e *man/all_sample_IGH_chain_all_metrics_wide_format_dataframe_list.Rd
c629da044f72951ec9b4330847ba749a *man/all_sample_IGH_chain_individual_metrics_dataframe_list.Rd
a45e67696cd48a75474c512edab6bc24 *man/all_sample_all_chain_all_metrics_wide_format_dataframe.Rd
abb0e44b83822d0c8f2cf6c2edc26757 *man/all_sample_all_chain_all_metrics_wide_format_dataframe_list.Rd
f531535c312529266fac26887005894e *man/all_sample_all_chain_individual_metrics_dataframe_list.Rd
a431672a3090f122344cc094c69ad66f *man/annotate_chain_name_and_isotype_name.Rd
80c9ed97800e6dda9cf7c045eb85e48a *man/calculate_IGH_isotype_proportion.Rd
2198215ddafc81be51bee335aa526e2c *man/calculate_repertoire_metrics.Rd
6377be622e7373172ff8ebb6e5f68be4 *man/calibrate_proportion_by_clones.Rd
51384ce85173ec4b4293187b11f26de6 *man/chain_separated_dataframe.Rd
47ea46ee4077232e4cdf0d5218ef842a *man/combine_all_sample_repertoire_metrics.Rd
29d2c92bc1f7b596ef0683cac8090ea4 *man/compute_repertoire_metrics_by_chain_name.Rd
7bf43040d1d2532ae9b4c2897748196b *man/convergent_clonotype_merged_dataframe.Rd
86a4fd74bbf67a956bd44d91c01438cb *man/figures/ggplot2_logo.png
2a538dded6d600bcf625228e5466476e *man/figures/logo.png
c9d5ac539a97598030787bcbd728425a *man/format_clonotype_to_immunarch_style.Rd
4889f44f7eb9e7c6fefb2b922a0d05aa *man/get_item_name_x_sample_name_for_each_metric.Rd
3c406dc10cb105942826b0794d633d31 *man/immunarch_style_dataframe.Rd
08e2445e7c98de74af0a767653464828 *man/merge_convergent_clonotype.Rd
dd1d4556195f8d5cbc149940a877ecb9 *man/nonproductive_CDR3aa_removed_dataframe.Rd
6e6f417f017e490148368e6e8491309a *man/parse_mixcr.Rd
5ec3511892e3b9a8d7fdf108f6f1da36 *man/parse_trust4.Rd
b4a0c62629d85a9a95968262c93b04bd *man/rTCRBCRr-package.Rd
2c0636547004f106b958e6df437f68c9 *man/raw_input_clonotype_dataframe.Rd
495964754a6fbaa9b1854ed6be58e83d *man/remove_nonproductive_CDR3aa.Rd
ada3997b2d76797afd81ad4c887d9c8e *man/summarize_convergence_function.Rd
cd4f677ed4712ae6a7b02022d11646c2 *man/summarize_repertoire_metrics.Rd
b5da9a6c4805d01d887de524f73d7679 *man/the_divergent_clonotype_dataframe_list.Rd
daef36ba95520601a090f46d15357e42 *vignettes/Quick_Start.Rmd
