cc3b2627d4b9e1d5ad3a7c767b0a1f6a *DESCRIPTION
6838485b48ac8f191497e6aaa0a5fc71 *NAMESPACE
fc92dd8ac6845004324589abc871f843 *R/aiding_functions.R
060658cd73681a178b1a18aef2d63654 *R/exported_functions.R
6d7df7870655acb3c185e80b9c0d9a69 *R/p4_functions.R
5756f992e2fe114e40522790f31e4806 *R/r2_functions.R
3859f1c996cff5d6b6d509be74c5900b *R/r3_functions.R
905cf32a6d446281f8b10ac4a16461de *R/r4_functions.R
b7d8ec75868c884e9e94fa1fd2c147fc *R/r6_functions.R
9ab1f8813cd7b290c8cfa35d843153ab *R/roxygen_datasets.R
121f4576a0451346129c7524c72414e0 *R/sysdata.rda
21e72520949107a76dad7b6b663fba74 *build/vignette.rds
2e017d9d11d73c2d111f37daf2f8edad *data/ALL_dosages.rda
875baa62048b4ccbe6d5d99ea36ce30c *data/LGHomDf_P1_1.rda
e24dd9040a6224689e156171e73221af *data/LGHomDf_P2_1.rda
bc2b898070ea9b3c2dfd022d1e1b4db0 *data/LGHomDf_P2_2.rda
2b9e0a408213367d989c172b9efff921 *data/P1_DxN_Assigned.rda
15625a42c51e8dd57cf41ed3d6b3e40c *data/P1_SxS_Assigned.rda
9ba2890b9d4048e6142a8a4e6b828f0d *data/P1_homologues.rda
63e5f703ef2143d265387af7102f8a05 *data/P2_DxN_Assigned.rda
e5701c0e7b79fd551a9710f0fbdcb655 *data/P2_SxS_Assigned.rda
10fffb7f2ac42ad90178dcc3bf500414 *data/P2_SxS_Assigned_2.rda
4445dba6501e0370e5134e114aa040cf *data/P2_homologues.rda
6717bf65655337d2ff80b98cac6a66ce *data/P2_homologues_triploid.rda
6f2715a7ffc12ee9f6f0b2b8d0471d57 *data/SN_DN_P1.rda
d1f42f2f9f75af802a075c8375fc5856 *data/SN_DN_P2.rda
11703e978786cd987e228935a29cb9e5 *data/SN_SN_P1.rda
09636c9fc774f291140da6df70eedb2f *data/SN_SN_P2.rda
d7d9f95e5de8d4ae4d702d3627055199 *data/SN_SN_P2_triploid.rda
fc799ad499ba92bb0f6c5a0fcca635ae *data/SN_SS_P1.rda
037f7276f2714b53d80214db43a71d32 *data/SN_SS_P2.rda
9f24c27fa151cccf6ce2cafaf4663cf2 *data/TRI_dosages.rda
dc12cb239ca9d96ea0ca94d70b05ab81 *data/all_linkages_list_P1.rda
859e3d330cc2f7cad6a15ba35897ba3d *data/all_linkages_list_P1_split.rda
7496708b80cfb9deb86476715c353b66 *data/all_linkages_list_P1_subset.rda
5a6e207c0ef750ea9de25de7d8bffc68 *data/datalist
b6f198a20e2edc9617b05ff38943a413 *data/integrated.maplist.rda
ea784fcddb6d2dccd6b52b513e6a49ff *data/map1.rda
4706a1758495cf78b502a716be54fe2e *data/map2.rda
73c1dc82a04f40cc5e866b369c2e96dd *data/map3.rda
9220f4224f57b497226c8660127350ad *data/maplist_P1.rda
3b66998e8763362209a42f0a7e586d15 *data/maplist_P1_subset.rda
d19e640b5214d2fc872f96c599f677b7 *data/maplist_P2_subset.rda
bb260483c6e915f9eff01fc56861245a *data/marker_assignments_P1.rda
fb1530bb1ee8232dc9c905870a139ffe *data/marker_assignments_P2.rda
a33afb837acde9f419fd029d2721cd61 *data/phased.maplist.rda
e42532fd70f97436f54ec370c60c20c6 *data/screened_data.rda
43ac32cfa93eecfe4a70f98e3a11ff82 *data/screened_data2.rda
8df63499b0b88f760be1ef610799c053 *data/screened_data3.rda
b2f9679c28f0792f5455a84baa0c4149 *data/segregating_data.rda
9e625cf3668b717d876d5d6aaacca03c *inst/doc/Vignette_polymapR.R
4dfd06d5525376f15c86aa72c9bfbd68 *inst/doc/Vignette_polymapR.Rmd
311a0bf07edf5da9c6314bbfda0a78f6 *inst/doc/Vignette_polymapR.html
4d5f4f9b98c18a2406c903f9fe0adb01 *man/ALL_dosages.Rd
37a29f084f1bcba21b886edb7c8b037f *man/LGHomDf_P1_1.Rd
ec8051d1694c9e96604685606ae7c445 *man/MDSMap_from_list.Rd
5837e97fef14551a3e0d55102c63b997 *man/P1_SxS_Assigned.Rd
c0be7e3e00cfe60a7ff87da080ac6379 *man/P1_homologues.Rd
4b7aedb90a5c11d7f9525043be8e965e *man/PCA_progeny.Rd
4b78ccc0caaaa38c851b1dd6a416f041 *man/SNSN_LOD_deviations.Rd
fc33f1e9af3b292f86e1fc1f759ae5d9 *man/SN_SN_P1.Rd
ed730a7f4dc08bae7761a693e16fa13c *man/add_dup_markers.Rd
eac827267103477669ef2648828b14fe *man/all_linkages_list_P1.Rd
d3300843952ba9b22471deeb0044e2c1 *man/assign_SN_SN.Rd
5d86400662300c4f5c062227646c6296 *man/assign_linkage_group.Rd
4b647633d276b1f63567cc49850b5dcc *man/bridgeHomologues.Rd
0ec5058e2dd05889ca000f13e7a58474 *man/calcSegtypeInfo.Rd
0758f79220a02ae5a7a78cbe0a8913fd *man/checkF1.Rd
6fb89396ee46cc30cdd0c9bdc788a81d *man/check_map.Rd
dd0ab56b21ba6bada86d1f2a270d4f14 *man/check_marker_assignment.Rd
79c4cc18c3527068edd97b6db125f4ec *man/cluster_SN_markers.Rd
bfadede26a469ab3f8110b52e8e5ef2a *man/cluster_per_LG.Rd
1b905f31218cc709ed4bc1fb102731fb *man/compare_maps.Rd
f6e9ef64b428475c001e01aa367e3fbe *man/consensus_LG_assignment.Rd
29e06787bec64b752653f1f82573fad1 *man/consensus_LG_names.Rd
a6e0507f90a9c17cc4e0fd2c2687ec14 *man/convert_marker_dosages.Rd
3971d9398f267d1d18cf7e4257d82c78 *man/correctDosages.Rd
dc0804b3fb39f85a47464df862e3e35b *man/createTetraOriginInput.Rd
568c4b14efe4a69124d86115dfaeb2ec *man/create_phased_maplist.Rd
dde9565dfc40abd6fc4ad6ccd03077a5 *man/define_LG_structure.Rd
f00e135719a9f83e4680d0a76f0e6b38 *man/finish_linkage_analysis.Rd
7fcd5c2fbe3f5d37e7cd479b35981e14 *man/get_markertype_combinations.Rd
8e4431f709555796a8489e0a4e36c8ce *man/homologue_lg_assignment.Rd
b1ef02e2a162470440b48fd5301a8c5a *man/integrated.maplist.Rd
cb95f694d92c82c852f0143069ae787b *man/linkage.Rd
4e89ed7eb74bb30d1e7e5a98c1ecf464 *man/map1.Rd
cb3837debd908714ac6fc17151265126 *man/map2.Rd
94ac95951e506f68462618d41c024345 *man/map3.Rd
1107052bf0fdaba60c94102d34fb0aae *man/maplist_P1.Rd
5c3d44b676dcf4f0a0803f1d00891370 *man/marker_binning.Rd
9b340d0d7c1b28ffebec33550f3b6040 *man/marker_binning_list.Rd
e378fa5618fbb71544685d54d937c63d *man/marker_data_summary.Rd
d1eb44f79b7226d139a17346d62fb2a1 *man/merge_homologues.Rd
2574a5d9d04bf891c7467baa1c9a593b *man/merge_marker_assignments.Rd
186745618cc0cd1f20599871a3d62d42 *man/orient_and_merge_maps.Rd
95755f4f145b7b919f6549d94ec54902 *man/overviewSNlinks.Rd
24481d7abe85a9dc651ecd573fbcd930 *man/p4_functions.Rd
612dc44477c84628310a7d4b44680668 *man/parental_quantities.Rd
cf6d591f6158031db08b72c1e5424d99 *man/phase_SN_diploid.Rd
b63c5e61828c3ce47f0f5b8e47f094df *man/phased.maplist.Rd
9e2f4d4cb446635b7054285c4747469a *man/plot_hom_vs_LG.Rd
d085b2754579670014ae1877c7c41433 *man/plot_linkage_df.Rd
efebeb6d0ad4b6fd338791deceba04ca *man/plot_map.Rd
ca239dd84c14e36267ef3e210a25eeeb *man/plot_phased_maplist.Rd
a0a67fc4f245abb87e5a016483a32bf7 *man/polymapR.Rd
1eeddc0eafe7d3c16b3a76a2a6ad2e90 *man/r2_functions.Rd
4df50c34a4e62e3803ffff4e527a3350 *man/r3_functions.Rd
302ff344c87834fb3ef0045f640ebb0e *man/r4_functions.Rd
71fca15f6604cdd030a0e7030a4ca226 *man/r6_functions.Rd
d4478db1045ea256d8806b97b5d5aa01 *man/r_LOD_plot.Rd
4e9f21636a01e54446c92aeb104a6a02 *man/screen_for_NA_values.Rd
33d1737a97755865aef73b9e7b09bf78 *man/screen_for_duplicate_individuals.Rd
ae3a350a7482f889aab7dfb1c156b01c *man/screen_for_duplicate_markers.Rd
32e5a36d37594e9f116ec8b062000238 *man/split_linkage_info.Rd
24bb5cf249c6731c67f3de3f8b5d32e5 *man/test_prefpairing.Rd
21d62d5350d804865b318b7a54e2eb3b *man/write.TSNPM.Rd
b4e0f98f2e565bffe899a0a0e1909ed2 *man/write.mct.Rd
47ca78706727ba68c891c0aa43a44edd *man/write.pwd.Rd
959ce3e621d05d455b5135824e63f28a *man/write_nested_list.Rd
58bba0b8bc6055f6c129b142c83f35dc *man/write_pwd_list.Rd
4dfd06d5525376f15c86aa72c9bfbd68 *vignettes/Vignette_polymapR.Rmd
0bc00696958a7f058729f65319e3fc50 *vignettes/bibliography.bib
2a525a4d0bfde9865b47c532ce586782 *vignettes/biomed-central.csl
deaf1895c0ceaab8689a01b897971659 *vignettes/figures/LG1_check_map_plotA.png
d20b9d27d72b03196062411dd9cff82d *vignettes/figures/LG1_check_map_plotB.png
6b4955e241d15d48f601b17efb676552 *vignettes/figures/figure2.png
d8f753b0f7c1856fe4a80d206dfa1b97 *vignettes/polymapR_vignette.RData
