comp.freq               Compare Model Probabilities to Frequencies
is.tree                 Compare with Tree Format
kidney                  Cytogenetic data from kidney carcinoma
MLparameters            Compute Maximum Likelihood Parameters
MLtopology              Compute Maximum Likelihood Tree Topology
mrca                    Most Recent Common Ancestor
subtree                 Subtree
boot.conf.values	Bootstrap Confidence Values
leafset.prob		Probability of a Set of Leaves
leafset.prob2		Probability of a Set of Leaves