7d42b88e87070a9b85a947ecc2308150 *DESCRIPTION
c758c095365864b53ed3bae90ce6ac4b *LICENSE
5e08ac348f2907d1c6543d2581bf7f44 *NAMESPACE
141784cdec81ff5f8efaaa12c6ba666d *R/applyTraitTradeOffs.R
0699406e98dec147b5c696e65f0295b6 *R/assignNAsToMFGs.R
2ac26a30cd3e24c727151764b7919171 *R/assignStrainTraits.R
702d85bec9a4c5aebe0eaa8b6f4f8151 *R/checkResInfo.R
3df644bf6b7d1becf40c00ce1d40eb55 *R/checkSolution.R
24dd56369ca6aeeab7580e24da09493e *R/checkStoichiom.R
4db86aabfdbbf3d5898c117393a52539 *R/combineGrowthLimFuncDefault.R
0ab6a0d7c597e8633c94e777ee6772c5 *R/combinePathsFuncDefault.R
1c192a10beaa2ce4405022b050591e9c *R/createDF.R
16cb5658734c6b9c01d80871488dee34 *R/data.R
7b10493f4247f8054d22f5aa4bdb1d95 *R/derivsDefault.R
fc834b6d27ee304a3e2de05759162103 *R/entryRateFuncDefault.R
e5ccd413694e52972caa4ee0847413d0 *R/extraGrowthLimFuncDefault.R
bff21562200906b4bbdc8a439834762d *R/getAllResources.R
9d78e837053ae1ce83afba273b8a2091 *R/getGroupName.R
78b1a214c5be6acc0ea7235ac0e0482e *R/getKeyRes.R
73d7f3d9ae3f138202a3a3ce02c72d4a *R/getMolarStoichiom.R
5df6388bb028daaa0bde99fee0b13c10 *R/getMolarYields.R
fcc7af9e1c61fe7c63c529f52f53d1d6 *R/getNonBoostFrac.R
acbabdf2a43ed4464757fc7841298e21 *R/getNumPaths.R
3b2d15dc73d14a2b51b975d616184e58 *R/getPHcorners.R
7950dfa5c796e5b4a85d5b67b194bf73 *R/getStrainPHcorners.R
c51fcba5f56c61ef37ea48d253c6cac0 *R/getStrainParamsFromFile.R
3eac92d434001ce700fbb8fcea81a0cb *R/getValues.R
03d2299da54222ab92c59918ac988786 *R/growthLimFuncDefault.R
e3e3addb68d4fb87553628c67d51ba28 *R/makeInflowFromSoln.R
4035bb499e97b0eb6c010dc509e1dca9 *R/makeParamMatrixG.R
ed2fceedba2307ceea6259c5e1082f13 *R/makeParamMatrixS.R
f1531013eab1c8adef6ce498f014935c *R/massBalanceFuncDefault.R
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4a126ccc8443b84c03787976b5ae6fd8 *R/microPop-package.R
bbfe902f38283ce7e3a304787ca0ceb7 *R/microPopModel.R
d93f5e5dcce246ad54556f2eeb699f9e *R/onAttach.R
39f22368a990decf99366640d89793dd *R/pHFuncDefault.R
70743879a6554dc5aada767c072c0d2c *R/pHLimFuncDefault.R
f1fbdbe53cef8b46947b72c4e4dcff9a *R/pHcentreOfMass.R
9ffbc90285a996dffe740d200d8aa9a9 *R/plotTraitChange.R
33fdec2eac0461447ded413ae98a2ee7 *R/productionFuncDefault.R
2b53f8efbc01545cdce587ba24e08653 *R/quickPlot.R
a76cd2ff5524564b171308a96c6fe8e2 *R/rateFuncsDefault.R
4e54e90767cf48f38b090bb81ba88f2c *R/removalRateFuncDefault.R
42a8329c9bebdf06a9a31514daf96159 *R/replaceListItems.R
e124e650df96e14f081e8ac24c81e057 *R/runMicroPopExample.R
e70c25bf2a2584d9aa9997153c378916 *R/subsetFunc.R
e87df5f6db9179ae5201d56ea620f009 *R/uptakeFuncDefault.R
d54cd12419d705dd2209182f8e7dca72 *R/waterUptakeRatio.R
e9a5cbbebccaef8ac99a6773f500d309 *build/vignette.rds
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469c45facde8bccbb11e9f69a2fe2c41 *data/Bacteroides.RData
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0ccb7153d945e953891ae4f5060fbc07 *data/MFG.RData
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2f8b2e08f15773a260ad84ec9ee6b218 *data/PropionateProducers.RData
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fa938c00659ba56d0832af370d2856c6 *data/Xh2.RData
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9bf591a80a0ac1a08cf113960e59db32 *data/microbeSysInfoHuman.RData
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3cda8018be743e2d40c2b8899e7ae461 *data/strainParams.RData
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4a7ad822227b1196489d31d3d181173d *inst/DemoFiles/rumen.R
cbdbc0339cb0f5ad131a93e62eb0a25c *inst/doc/microPop.pdf
061e5dc1fb215f823437ef698338d1b0 *inst/doc/microPop.pdf.asis
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db7b10e491e2faa97fd6f84f5d12b731 *inst/extdata/LactateProducers.csv
26d493ec55c0902963b43a6b1bbfd2f4 *inst/extdata/MFG.csv
00786058a89692576cd5ebf174660878 *inst/extdata/Methanogens.csv
93c3988be372dcbd28bcc86ebf8b2114 *inst/extdata/NoButyFibreDeg.csv
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8a3a896c9759a641f148c9bc3d83c9ef *inst/extdata/Xaa.csv
8c315a06f6bcb053c5f0d76c5cccb82f *inst/extdata/Xh2.csv
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8c0500298443160d57a433fc7e0b3938 *inst/extdata/microbeSysInfoHuman.csv
1714a617e4e7a3b2a38e1f03620280f7 *inst/extdata/microbeSysInfoRumen.csv
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7990ce6c46f5b8431bdf7a26fd1a1cbd *inst/extdata/strainParams.csv
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5e20079438830a00f55feb465afbfba1 *inst/extdata/systemInfoMicrobesVirus.csv
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c610ed827bcf05f3a913a3fb28e6f924 *man/Acetogens.Rd
8a02d39bbb9becf1265537823fb55ae9 *man/Bacteroides.Rd
93c600305e3f65fcb1f5a989c96a23d2 *man/ButyrateProducers1.Rd
40987c75bb16ac96449bd580f66672ff *man/ButyrateProducers2.Rd
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1dd696415986fb5797990e659d75d435 *man/LactateProducers.Rd
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964d39fa9d4a950d73beb6b1759f4925 *man/Methanogens.Rd
47e88e48ad28d0a97c564e9c77a85517 *man/NoButyFibreDeg.Rd
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4b714c1a7569395bdaed97d486fb2351 *man/Xaa.Rd
3a3936c10d64649f47ebb6a70c562ba2 *man/Xh2.Rd
5af3241ab1453e08277f4037948abb40 *man/Xsu.Rd
3652aff72ada4bf3fb96f90f83265a48 *man/applyTraitTradeOffs.Rd
300e4e7864a86caa854226bac5c35bee *man/assignNAsToMFGs.Rd
5f0822d690e1179a221f756f31504b99 *man/assignStrainTraits.Rd
a298c08abefdad6e0d21ada993d951f2 *man/checkResInfo.Rd
8c986a1c7b3b86c75c14e98c64776afa *man/checkSolution.Rd
9e897af7dad488ada930f031b33144f0 *man/checkStoichiom.Rd
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4bf273667f09da55661ff3fbed9987b9 *man/combinePathsFuncDefault.Rd
bbe235e8759f2d636f4df95d57054001 *man/createDF.Rd
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68efc23a895e54ed9608666cacae9ef7 *man/entryRateFuncDefault.Rd
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8fd69fb479c2f531c97768e5f22295f3 *man/getKeyRes.Rd
51868e911b18950b3a347667928c24da *man/getNonBoostFrac.Rd
273e3877da5fd8788b9b3bf3dba55eef *man/getNumPaths.Rd
febbd3e4da4fe92ca95119d00c527c24 *man/getPHcorners.Rd
0e45d9b698167bcf353556a0c96808dd *man/getStrainPHcorners.Rd
628b59e98d6ebed0f3a7a3e71aabf974 *man/getStrainParamsFromFile.Rd
8dbc810d2aefba963736b30c5bffdad0 *man/getValues.Rd
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63f3ce9e48b541212c5cfaaa0a2e8364 *man/makeInflowFromSoln.Rd
4f39c2f723a91d103aa2e322910940ac *man/makeParamMatrixG.Rd
4675b7f7d7dcdfc7822a76848fa1c2d6 *man/makeParamMatrixS.Rd
0a908ef9502833de20f1a0fbfca0136e *man/massBalanceFuncDefault.Rd
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329bd4a759a53355d7522de78475e79d *man/microPopModel.Rd
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99f72dd7a3dfb886710fb693c877421d *man/microbeSysInfoRumen.Rd
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31f74e136c96f813db7bd3ebc0a1fb11 *man/plotTraitChange.Rd
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11d9be85e0a1388b3ac2db4656856596 *man/quickPlot.Rd
6f4db1315db1c71bc9d489450dc4ab34 *man/rateFuncsDefault.Rd
4f4e9711a5e27ce068be00b39a11d624 *man/removalRateFuncDefault.Rd
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4d3ecc538f8f1576f8e519ee3343b87a *man/resourceSysInfoHuman.Rd
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97c183f93f6e7d37a963c661a1d2e281 *man/strainParams.Rd
9c3902c66d00ea53f45142444b0d582f *man/subsetFunc.Rd
9aa3aa4660b386fba116a4ea020a6061 *man/systemInfoMicrobesPhyto.Rd
64288c1b76142626c1bf6387cce4a1b8 *man/systemInfoMicrobesVirus.Rd
f20df153273e8ba027e0f19ad3407168 *man/systemInfoResourcesPhyto.Rd
ff0701c3115ba9bc944e3b5946f6d32e *man/systemInfoResourcesVirus.Rd
1a9e95a9743693451dd9516164c3b8eb *man/uptakeFuncDefault.Rd
5e065bbdf9ea8c8af8aa88bd47cb0418 *man/waterUptakeRatio.Rd
caa07d510e77a49528dbfed50f88d198 *tests/testthat.R
4dd0e011234f1a8982d093690749ac8e *tests/testthat/loadTestDataFunc.R
71d109f1734263dd544e01a0c869624f *tests/testthat/testsForModelRun0.R
035c97a09e95da4cfba9fd4584f1eb81 *tests/testthat/testsForModelRun1.R
a438e68c84f1b531b8227be4a4a5ddd0 *tests/testthat/testsForStrainFuncs.R
5553461311b60f8020470fbf530f86c2 *tests/testthat/testsWithNoModelRun.R
061e5dc1fb215f823437ef698338d1b0 *vignettes/microPop.pdf.asis
