78b2b87d6a1685e892c18c73013f5a0b *DESCRIPTION
eeb8daed0d9a2d3ac16a025e4d68970e *NAMESPACE
e7d973c5736743ad454d7dbed07db309 *NEWS.md
18a4903ceba29a8fee139c4057e8323c *R/dataset_documentation.R
29fae9fd24631aacaf7a3efca0357c84 *R/extract_taxonomy--internal.R
951851f7876fa9cfd33115fa8175d7f2 *R/extract_taxonomy--parsers.R
32591390f783d3acda1b295030d5adc7 *R/extract_taxonomy--wrappers.R
cd3a42506cee2b25dc9e6a45abe4eca9 *R/extract_taxonomy.R
4ab99b6eb7f746a8345b0cee03430d4e *R/heat_tree--internal.R
9f0778dabc312c90e75349d1b2e4cb4d *R/heat_tree--layouts.R
3f5528a2197e7f074460b317a22d2d9a *R/heat_tree--legend.R
39db560be9d08cd140f1c229770d2840 *R/heat_tree--mapping.R
529fe118c9341a2b04883a23e6431990 *R/heat_tree--resizing_text.R
9f8ec9443b490fe21dea8f32fe1a2472 *R/heat_tree--shape_generators.R
8059ddf7f4193c8473b725f24dd8eaf9 *R/heat_tree--vertex_size.R
1e84d4d02600a256ff25ce2f527ec6bd *R/heat_tree.R
e93a2c2cc72c80e2b14e8b1c6f29b72c *R/imports.R
1f1d1f6f0dd5e06ba4de59a0f8df56c3 *R/in_silico_pcr.R
5d67174900473c441e958ba78cf2704d *R/internal.R
1a6912f2fdab238e8252e3dcf4b6e9f5 *R/metacoder-package.r
3b8f2ac0408d5d78bc59d339327a983a *R/mothur.R
e32a1bfc273dd53cfa0100c444f95d14 *R/old_code.R
e3c89f9f95e31343399e04f8a067df6b *R/plot_alignment.R
2a7fe11c32e5e5226104a0e4c40a1538 *R/reading_files.R
4f4db53b585e1c51cf89ec4007fc8330 *R/sequence_download.R
90d8d1cc0f7315659927ee3284a1bbfc *R/taxmap--arrange.R
7815b9a16c3e28c0563c3791c5b380fb *R/taxmap--class.R
28edb06b4ce1334f8e01bd13e54d56bd *R/taxmap--column_generators.R
fd979bdb426e2560115a880eca71864e *R/taxmap--filter.R
11bbccb758cce8899cf66b27f8cb8eb6 *R/taxmap--internal.R
4ac40f8b25ac855bb09e3c2efb9a3a76 *R/taxmap--mutate.R
8f4cd181a9dbbfa728eba469557991cc *R/taxmap--sample.R
a98ea86b63c04861a82ca825b95f90b4 *R/taxmap--select.R
e660b34f18ca8a8be729bf53bdbceb73 *R/taxmap--utilities.R
a9f8d0bcba9c97dcad1ae492d9b30efd *R/taxonomic_sample.R
c2596238220f3318547ea9f83f8f6480 *R/taxonomy.R
214d50a3241d441a17cda8da4638aa4e *README.md
7fb9fed1887493d51e4f3614ec87c620 *build/vignette.rds
f694b158d4e77909a8047345d8cd7ff6 *data/bryophytes_ex_data.rda
4241edd1b50600b7776651fb4ab85467 *data/contaminants.rda
79a2714c9264ba21542f7c797afce2a4 *data/genbank_ex_data.rda
75fe8519e2ccdae5c9e5b53e121a3783 *data/its1_ex_data.rda
e59120662709463d3f0d998b571394d4 *data/pr2_ex_data.rda
0d3735c7d801ad063ebf30e4ceb61dd2 *data/rdp_ex_data.rda
2752b2245f78e5462cfdf0739d08f0a8 *data/silva_ex_data.rda
74dbc0b815480a43e6d141e2022c2edf *data/unite_ex_data_1.rda
89fbdcf3f356480556892a51ef0d59cf *data/unite_ex_data_2.rda
8a77d577ae7c51865ea9fd5b59435b76 *data/unite_ex_data_3.rda
32b3ccdc3e0ff69324e0e9c7efd1b85c *inst/doc/introduction.R
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16b36f8cf66c2522a2b4d5d0077d88b9 *inst/doc/introduction.html
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0bb16a33cebd20325455a3c48ca7b8ec *inst/extdata/mothur_16S_training_subset.fasta.gz
d7589ca1425b3fcaffdccec54cf9df68 *inst/extdata/ncbi_basidiomycetes.fasta
53b1665d647cc40f13b469fe04b1acb1 *inst/extdata/pr2_stramenopiles_gb203.fasta
d4c8d438b40739887d913b92e3d3530f *inst/extdata/rdp_current_Archaea_unaligned.fa
29ff9192325eaf5a0f67e0234ae7e377 *inst/extdata/silva_nr99.fasta
4f2c6bd07cc9b5fa4836f5efadde0799 *inst/extdata/unite_general_release.fasta
5de36ee3da0b252c11f400d90e15a3de *man/DNAbin_to_char.Rd
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2f0d0b28780edbbf85a4fd1f4bbb5b48 *man/arrange_taxa.Rd
a1d83af0fae55dae05b4226417e683c1 *man/bryophytes_ex_data.Rd
5dedf9b24092bbc824f372731315601e *man/check_element_length.Rd
999047514059694b9e78b452d428a9f6 *man/class_from_class.Rd
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22ca9a2ae158638339651faa6b9eed46 *man/genbank_ex_data.Rd
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85171921efce96b95a365d793f1c5d9c *man/get_edge_parents.Rd
91dfbc79ac64a55e9e58e33cf444ee8f *man/get_id_from_name.Rd
789e53d0ca5e7cd349e11ad63425f292 *man/get_name_from_id.Rd
463d2eebbd3dce658c383851cad25eb5 *man/get_node_children.Rd
18c008eb3d405cb516890ae2f333e4dc *man/get_optimal_range.Rd
6cdbd13666cfd402254a4201a2311136 *man/get_taxonomy_levels.Rd
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990c91d5685f91ecff4ac8a6f61e6360 *man/heat_tree.Rd
10e55c2a326e0ee58938fd36f1c98991 *man/hierarchies.Rd
02973e853a02401ce4637d9ea0374ab2 *man/inter_circle_gap.Rd
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80159f9bc1d479a0d8be9bef1cda55c9 *man/line_coords.Rd
222284d27f33644fdb5b1a10922e9c87 *man/make_new_ids.Rd
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7380c0bb6aeca4773e9f9dcb9f7b40ae *man/make_text_grobs.Rd
477292db5dbc8a550708a752f3747549 *man/map_unique.Rd
8f38d6247bbcde04a343f8134e11b2b8 *man/matches.Rd
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8f9159482c98bb05a9a3b04be327e67b *man/molten_dist.Rd
7837ed6f27c6e4728fbab55f5d49ab06 *man/mutate_obs.Rd
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872812eebc416998c32198cec3bbefc5 *man/n_subtaxa.Rd
00a8b2d7697d50226bb16bd05fefd738 *man/n_subtaxa_1.Rd
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22b07c001ccce5ccb17202db7d9d79ab *man/ncbi_sequence.Rd
5e9f028b66f9f11986ef421c8ef29e5d *man/ncbi_taxon_sample.Rd
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ab9c46bbb023b6f47dacb9f7bfdf9556 *man/obs.Rd
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680b5aeb8796f8b7412385fdb46b6883 *man/obs_data_colnames.Rd
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d7b33e1ab7625d8b918361c5ef257347 *man/parse_hmp_qiime.Rd
7f5a56ca1dd65cda9b89c0efe9effd6d *man/parse_mothur_summary.Rd
41344ac8f8f6631fe21138256e571d9a *man/parse_primersearch.Rd
e2c7b8e5cc0a3ae1715d249e52280002 *man/parse_summary_seqs.Rd
fe148acfaa7bd3676fb272a4959f7c1c *man/parse_taxonomy_table.Rd
dfc74b94d05eb5b0a4757919bde32ce3 *man/plot_alignment.Rd
39a53a7d42d4686138324141c3781c63 *man/polygon_coords.Rd
ff69d25c5d8c8a26b5363f3399395381 *man/postDrawDetails.resizingTextGrob.Rd
25194fc4902a1759ea5b9e1e0c4218db *man/pr2_ex_data.Rd
851ad5880229e588ebd2ac1f56a7eef9 *man/preDrawDetails.resizingTextGrob.Rd
16a1f4ed58cb176c270725aef2bf83c0 *man/primersearch.Rd
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c1a780a647856db7cad9e8545689f7ba *man/print.taxmap.Rd
6ca798155e7fdb93047a5bc7de09be07 *man/qualitative_palette.Rd
0992e817c4dffc30535aa9639667a9db *man/quantative_palette.Rd
16a5005c086faf57324e6d3ea390aea3 *man/rdp_ex_data.Rd
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513b10f141af8a0e1cf6ca95cb887fcb *man/rename_duplicated.Rd
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8160479207112cf4d03eb0ca28f45b4f *man/resizingTextGrob.Rd
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8ec9ed4e6ec0e901ece0e23363c334f7 *man/run_primersearch.Rd
4eb95b80da1da6108eba2be0ff707510 *man/sample_frac_obs.Rd
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c8188ce4896096dfabd203def9c3e431 *man/scale_bar_coords.Rd
a1d9251b5f1a4084597cc28890e8f1a8 *man/select_labels.Rd
1c5c1a724cc3d577ad65789077751bfa *man/select_obs.Rd
dd220de6bea6bdebb416a07b8be02c65 *man/select_taxa.Rd
a074bb7d0fea2ca270982e5d8dd34608 *man/silva_ex_data.Rd
93b8802907d2e8ad02d6686cd5455358 *man/split_by_level.Rd
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aa123c068c06aaf9bab874a89afe43ca *man/subtaxa.Rd
df7b401511ee1d0d84bfd060343d5e34 *man/supertaxa.Rd
6dd1ce9fea4b68c23d5b7df47dd70115 *man/taxmap.Rd
80d70d7934d553dcab61b5385d27071e *man/taxon_data.Rd
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edb3b825daf5d1dab3b99b86d8d171a9 *man/taxon_data_cols_used.Rd
d49bebf0c6b674ac25ea9679852f2236 *man/taxonomic_sample.Rd
5d067f6e82a4664a6d503b3b1d776352 *man/taxonomy_ranks.Rd
25e0289169c7fac3d62b00d685fea15d *man/text_grob_length.Rd
e1b1e3861ec472a11cf0c5d1376c4add *man/transform_data.Rd
a1f87620c6e8e357471711884ec42524 *man/transmute_obs.Rd
1bf0a5e6eedda5e286c1938b841b09d9 *man/transmute_taxa.Rd
8fe46aad701843c797246d4d43213fac *man/unique_mapping.Rd
430615cdb163279dbeab9341cbbcccbc *man/unite_ex_data_1.Rd
031ff6eee1bf41741f3249c8e855d94e *man/unite_ex_data_2.Rd
8a908cb72894641cf694f7b6295c3533 *man/unite_ex_data_3.Rd
15bf2d90acf8d1316216416ac170c500 *man/validate_regex_key_pair.Rd
eec721afe71143848c211554df0036ee *man/validate_regex_match.Rd
546aed78f6773be472d202d30abd0444 *man/verify_color_range.Rd
04149aac4145a795229fb9de5f2764d7 *man/verify_label_count.Rd
103621aef436f0905519d44713e402f4 *man/verify_size.Rd
3f1367ff68561a60843da48412ea6c4a *man/verify_size_range.Rd
2738847a534ecfb62467280b00f1a81c *man/verify_trans.Rd
2277364dde9d9eacc270bbb2d2d1fdc0 *man/vigilant_report.Rd
d1655f8738e1bcc8a458da263b2fc261 *tests/testthat.R
70143713b38c2bd1cd212ffdfeb32e17 *tests/testthat/test--extract_taxonomy.R
457837c69ecb39d7f753f33adc714ce8 *tests/testthat/test--plot_taxonomy.R
c481e18c6c262404ded2df418ca45d0a *tests/testthat/test--taxmap--arrange.R
ba771926f97d5e6ea633ff20edae283e *tests/testthat/test--taxmap--filter.R
7191ad3eefaa0a20241aaac378e5a275 *tests/testthat/test--taxmap--mutate.R
2996160031531d6e35cd095620afd45f *tests/testthat/test--taxmap--sample.R
fbd33d64a76ff8f000215517a4384804 *tests/testthat/test--taxmap--select.R
adb7a79c0f42ac1dea593d5c40da5e32 *tests/testthat/test--taxmap--utilities.R
f17496fabc037e856db3b5801c1a4e4f *tests/testthat/test--taxmap.R
d6d0362c62a3932b68090096e8a383eb *vignettes/introduction.Rmd
