db18a7aa9be686e761e15dcca69ff31b *DESCRIPTION
a663660df9b812091597d0d136746718 *NAMESPACE
6337644c5b68d77587a31f5f6c4c016b *R/F001.load10x.R
09dc68431449d737b13334bc54856832 *R/F002.data.aggregation.R
7b94d4d5e0335b2f20e655ae17957dd6 *R/F003.make.obj.R
3b2fd2e633b84ec9376c1d0f9b2dbacf *R/F004.qc.stats.R
eac7f7de01fd96329af220251dc25a39 *R/F005.stats.plot.R
5cfddba09b371d6a3181f70aead5651f *R/F006.cell.filter.R
97608ece98d554cbfc96d114aaa808d7 *R/F007.down.sample.R
a96187dbf65abb2a0e946ac939a7f7c2 *R/F008.norm.data.R
88d62ee4eabb147dcc67e1b7190b34f3 *R/F009.data.scale.R
68c7b05da4358b5f1ebeb791da6e6a2c *R/F010.gene.stats.R
483e6219a873a45cd2fd3e2c51b47f38 *R/F011.make.gene.model.R
ed077f02ad0fe62cc333646f45a5e33b *R/F012.run.pca.R
63b4588564c68b0e39879c4da79888ce *R/F013.opt.pcs.plot.R
a3cf5d6f07c27afc43e1fef28a145a09 *R/F014.find.dim.genes.R
7bcb0c988aa50a6bde55348bf3717d3b *R/F015.run.clustering.R
46b93651735c21b7837929aaf9b78317 *R/F016.clust.cond.info.R
05e475703b371b31836f051e9f734944 *R/F017.run.pc.tsne.R
218a3f98b450fbda4a96c09974fcc15a *R/F018.run.umap.R
3d1392a440c2757dc50640501615484d *R/F019.run.diffusion.map.R
8dc94e37d923b0ebc92b4c953f771cf8 *R/F020.cluster.plot.R
a90e8bc206cda6ff74edcbae2eae411d *R/F021.clust.avg.exp.R
096b405cf4c529aef71e440b27e3f8cd *R/F022.run.imput.R
32a626b0dd312e609f421144d31880e3 *R/F023.cell.gating.R
9e95a42d0f3cea5e517093104953b26f *R/F024.gate.to.clust.R
0cb70093e9aa38e7a2e6a3c14db7f07e *R/F025.change.clust.R
f243ec597bec0109d1dbb7411e5105a5 *R/F026.clust.rm.R
8be4dc2e0816e743bc1d54bd58b2290e *R/F027.clust.stats.plot.R
fe8b697b34c3f27301946f504039a8ac *R/F028.findMarkers.R
ec4cd506284ecb28ca8f943d8e22cba5 *R/F029.top.markers.R
8744e96f9c69b89376d162bd2c92325d *R/F030.heatmap.gg.plot.R
9bcceb186e586125926da8b28d87cdbd *R/F031.gene.plot.R
31db1dfe262eb263254f493a1025b638 *R/F032.pseudotime.tree.R
f19afc8b9a88ee6edeb198509ae7fac8 *R/F033.cell.type.pred.R
e09f630e608c057b89b0658a02ae97e8 *R/F034.diff.exp.R
634d7af4832a55b498d32f31db019495 *R/F035.volcano.ma.plot.R
7b1ad615a9c4f9195538c96ff652a450 *R/F036.add.adt.R
745d8f9b02d4edf17ffd657aa6a64193 *R/F037.norm.adt.R
cddb4c94090e0776aece156722429b54 *R/F038.adt.rna.merge.R
728578de940a97ac40b87a05070d7c8c *R/F039.prep.vdj.R
99451f2377924febc3bb694b72bf9a26 *R/F040.add.vdj.R
e9b9c2baac5d876708afad8ddd840657 *R/F041.clono.plot.R
e420231f457afd5038c0b8b691ee515c *R/F042vdj.stats.R
7e03b98aaba4b73075eeac5669d8c7c0 *R/F043.run.tsne.R
e79c8d44197311849da07b3a2f36d813 *R/F044.myclass.R
e5bf9b47fd40ac13fe0a686e302f00da *R/F045.cc.R
94cafaaa6cd55259c425fcffd59f7638 *R/data.Sphase.R
14d8e5431ff5482a15bf5c1ea248ec7e *R/data.demo.obj.R
01ec88c6093c3b29cb7c8b3c4716da7f *R/data.g2m.R
28d1284b1ad8488fdc9df667ef5ca338 *R/gg.cor.R
a50fd91b0ebefff3032ae58b7bf6751d *R/globalVariables.R
39d2d3a8235487fca3121865164ee241 *R/hto.anno.R
e810b98bdf4c5d6566a944eb870c1d45 *R/k.myImp.R
802b6da6047ce7943c2a1cfbd06f4f6e *R/k.pseudotime.R
9f1a94eabef3063adc12b7711979106d *R/k.run.cca.R
a9152955a27f1c6284b42fd0407207e1 *R/run.anchor.R
2aa77d5c35e74b932f825388ae9a133a *R/run.mnn.R
a0b9342ab35cc412f83a0d29d8f9273b *R/run.phenograph.r
09f2a4653eb9fdfc69012b498d692a79 *data/demo.obj.rda
c8626f6a332dff8b9b29c2b8e24352aa *data/g2m.phase.rda
33a2facc7b2989ec2df1dd0b6db1fb37 *data/s.phase.rda
de78fb4613780372863753852fc03f48 *inst/extdata/all_contig_annotations.csv
06ced81080d1bae9d8f38a2ef20880fb *inst/extdata/demo_data.txt
805cfc956fe1b8445048f5f029738836 *inst/extdata/dense_umis.tsv
abdd67c8870e90c6478a8d72738e5730 *inst/extdata/filtered_gene_bc_matrices/barcodes.tsv.gz
14d4f657ac05179e2dfbacc5ea029dfa *inst/extdata/filtered_gene_bc_matrices/genes.tsv.gz
11ac1abe9f1f55dd29a2759ec0856ef3 *inst/extdata/filtered_gene_bc_matrices/matrix.mtx.gz
a7b290f1ae4c746a7a532455100fdd3d *man/add.adt.Rd
9b43ca553e8dcbc6c36f8b3f7b968fc3 *man/add.vdj.Rd
64a10bb53a666936a8db09e6dbb4482b *man/adt.rna.merge.Rd
0839b9d631b22caed231481dbcb5b61f *man/cc.Rd
75c7d257c1f578c89f2c18de6546b5e3 *man/cell.filter.Rd
b9a4d7c0aa6e556c90041226e0e37895 *man/cell.gating.Rd
dd3e613fa3f362b321e4eee44a32dc4a *man/cell.type.pred.Rd
48b270d21b00c1bc72025c508572e118 *man/change.clust.Rd
1b818ec4de03bc3150e027a2c41d2db3 *man/clono.plot.Rd
664df925784c7883e88e1b64bf15d181 *man/clust.avg.exp.Rd
a8c62f5f27b49cf8f4c555e2f4e2162d *man/clust.cond.info.Rd
4705523ad903fb5493419a501523940d *man/clust.rm.Rd
7a3b7e78c079dcbee106bbc863963e93 *man/clust.stats.plot.Rd
5c05cdf07f3264b18a66b5a6e03a3a90 *man/cluster.plot.Rd
d6c29f8944d117b58376daa35f3f6466 *man/data.aggregation.Rd
dc29192c345045221b39062631f7bbd2 *man/data.scale.Rd
b69566c6987e7d56c0b8d2f3807ca772 *man/demo.obj.Rd
bc906e4d748a65578c258d7f507d4beb *man/down.sample.Rd
4c02328ceef06729f2f3ef53c96cd469 *man/find.dim.genes.Rd
c5f91d67d99b14cf3dccb9a0458e8f08 *man/findMarkers.Rd
ca3e1175c845c0de8134a096fe358310 *man/g2m.phase.Rd
df5d432802765166c5752af3831547c6 *man/gate.to.clust.Rd
1f93a1c3a750b2ba37fdb826a5bb723b *man/gene.plot.Rd
45e6bbf729b285672e337a235454f698 *man/gene.stats.Rd
3a4c50b09f90b926175362cec7c4d984 *man/gg.cor.Rd
aa0e375d9f6dd05fc5ff5c27cad99301 *man/heatmap.gg.plot.Rd
69fafd1df8f1007cd1ec3ba0c3a3865d *man/hto.anno.Rd
184e0e7b1e0f3bbc51112412d43f8575 *man/load10x.Rd
3d0e7a0244ba4919005fd5322a503463 *man/make.gene.model.Rd
b94dff83dc8a2eb0c239d4b82745e1a1 *man/make.obj.Rd
d4ee33020af5294b554b29fd46eaf39c *man/myImp.Rd
d53c5d57c22686b99babc8b80010d463 *man/norm.adt.Rd
6e4c08e0df08b6f8bbe3a15502a10a70 *man/norm.data.Rd
41eec4a028f4f64c99c265214ae01acc *man/opt.pcs.plot.Rd
0db19136f09637f3ebc8c90e4dd39575 *man/prep.vdj.Rd
dd538401df061569a81237bde16ebf57 *man/pseudotime.Rd
c84f02aabd99787440a356d699da2809 *man/pseudotime.tree.Rd
92fc1ca446c0b53b4219fe1ceab382e3 *man/qc.stats.Rd
224223ee9c2a0b443821041a1ce9c0ff *man/run.anchor.Rd
1b052952407628c3fee0a643b510533a *man/run.cca.Rd
2ca0459e872816e421b9e7750425b704 *man/run.clustering.Rd
5630983a46c7fe8382bad61f182221a2 *man/run.diff.exp.Rd
71c6ab70deee7c21f1805adeda444f4f *man/run.diffusion.map.Rd
a6709d4007eaf110ae648a9779ded95c *man/run.impute.Rd
d101496c7d5ac46caa40083ee205bd4c *man/run.mnn.Rd
e0b0cb47c4a9becb11f36d85fd5f65d7 *man/run.pc.tsne.Rd
d94ea45a04a6f8db4463e3a305e01c63 *man/run.pca.Rd
b281286cef46947d2861a111351ef40c *man/run.phenograph.Rd
6798e60a7f2a26def6b9c4c7894fe1fd *man/run.tsne.Rd
b2f76229a3172da2a37ce1468cbeff2d *man/run.umap.Rd
0815b02fcb39ea39f1cb4596d46df923 *man/s.phase.Rd
ed125b7ca0ac1ab5226967c2a37326fc *man/stats.plot.Rd
6d9ce03544e10aaea2e4960a76e15670 *man/top.markers.Rd
94d73c70d30372b8f43eeca50a56ec52 *man/vdj.stats.Rd
04b7e41d05ff9249ef2d2a874ee8311f *man/volcano.ma.plot.Rd
