821e2ce75a15ad15277a25e5171d0640 *DESCRIPTION
66832aa1526ee4bc57fe92b7488c55dd *LICENSE
8bb557e9ca02b3b536b370ee6460a9b1 *NAMESPACE
19331b4c55ba987cdc9526771e4ba018 *NEWS.md
a7cd8c7e4ef5f4d33932538f046ad99e *R/check-args.R
19a98c4c6fbdf32f6958e140d8bf2769 *R/check.R
5e2a78931e8d8b481e01dd5ee599b8eb *R/class-def.R
01db4c6819ce290625b5cab7efa4e338 *R/conf.R
247f9da0f143bdcfaf5e3da5db0e442b *R/errors.R
44faa49ce91d7c5445e5ed8b73d7b799 *R/fetch.r
32df32506b0ac6efb90ec6dc8b15926d *R/generic.R
24925060bb3236c08f70bcc527852131 *R/kill-flow.R
3330819355575976cbb7c1c8a183b62c *R/limit_runs.R
55a53b5137be0c9a6954c70e79a29ba1 *R/parse-jobids.R
afeeecafba0adc928b124cfd8fd4c88b *R/plot.R
d5497d1e949a4ccd7bb4e6a31a725b53 *R/render-dependency.R
dc71442e3c726fd34b4f6e881e48200f *R/rerun.R
b7be6c621af2657d2981c3d5be6c6882 *R/run.R
98e8a3866e243761c2381f7f7428ac7f *R/rw-flow-details.R
6cedca1550c411ad54074befccb2faa1 *R/setup.R
5963c9435b07671a2fbcdcd343e0f409 *R/status.R
75cd24811c1bda6968ad36e8d1754944 *R/submit-flow.R
1ca5e0605726c30ef23d8a908bd77d3d *R/submit-job.R
5c083c04f65440cba7e48ac76a41a964 *R/submit-local.R
ae4acbb329cf2c19535bb520cf956a74 *R/to-flow.R
770fda67230847e34c63824c848046b1 *R/to-flowdef.R
b6edf361706831f6688fb4733816e777 *R/to-flowdet.R
a5ebfc0d285633e80c7c328d84ecd831 *R/to-flowmat.R
9bf71694239b1852043725ec22249533 *R/verbose.R
1267c9fd4ecda0fdf98aa7edd3958b53 *R/zz-create-jobs-mat.R
cca165733217266d1f1cf8a7d989a2c4 *R/zz-db.R
6f3ce127459a8fce4e726600b6b70474 *R/zz-examples.R
50cbe992deb7808c2e88436193034cc8 *R/zz-flow-code.R
8333d06a09dae507ec0f32eec40eb41d *R/zz-parse-resources.R
20b476e2b4880c79acef260792f5ed4f *R/zz-test-queue.R
fb497218ef02da8f0138d07f315d0af5 *R/zzz.R
b92a78d018195f35bc7ac2f951033bf6 *README.md
f3d2a811479a4ab590d3d61c2c6d5631 *build/vignette.rds
985b4c377e7721ebadfa3bb0b0c404fc *inst/conf/flowr.conf
a68797252fa465462027135f6308452c *inst/conf/local.sh
dbc2a8f28ecfcd8e5677cfce7c317092 *inst/conf/lsf.sh
1c881372633d4ddca6481b93057b4648 *inst/conf/moab.sh
7ed139bc722fc65c1a10938acba0c144 *inst/conf/sge.sh
1cf4a908acb50ce8a6ee2e3ed2d28e8b *inst/conf/slurm.sh
62fd645955ac3d4f1b45cf0c165997d9 *inst/conf/torque.sh
9d7ad38e84c39ce1261e8bc1b9699a7a *inst/conf/torque_comm.sh
13433c4725261eb3a64fb86bb9f48f98 *inst/doc/flowr_install.R
3f370793a8a8f43e4f9cd340d0af52ec *inst/doc/flowr_install.Rmd
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2092b1e424155d676f2eeb3ec60ac6be *inst/pipelines/abcd.def
889b2066571afea90ca6fc8d1bf48565 *inst/pipelines/abcd.tsv
aee7b7aecb6997e9b597c57d74212eb2 *inst/pipelines/fastq_bam_bwa.R
17906aa9dede4a6e3517fe46878bd57a *inst/pipelines/fastq_bam_bwa.conf
4a416d105fbd8e4f61f9ade464d57ba5 *inst/pipelines/fastq_bam_bwa.def
1db0e4114862b2561f0f79381dff730c *inst/pipelines/sleep_pipe.R
92353365c57ede5801e8ab4bd017ca50 *inst/pipelines/sleep_pipe.def
939a90aed8bd1457b7ad3cd394bc29ba *inst/pipelines/sleep_pipe.pdf
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0ca23734b574ce90d7723f6cf41e57f1 *inst/scripts/check_file_status.sh
9eea171da89d6c4a9a6f8f52309ddb2c *inst/scripts/flowr
a15d1f3ea02970c1b74590f99b36b46b *inst/scripts/flowr2
47fc310005604ad4d603e0b35c654419 *inst/scripts/show_linkage.R
de6e80b51656ad3c0bcd9e3b2586e928 *man/check.Rd
5cf6eab3d7ad0b83766f11fbca3ee785 *man/check_args.Rd
cc91e47daf301d72af6b3a469beeccb5 *man/create_jobs_mat.Rd
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82a67e172c0f214f539af0aa9e60ec1a *man/fetch.Rd
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5571d8d4695bfcb139eb978fce75d505 *man/kill.Rd
135c667bea28f90cd427f0f329f9c4ed *man/opts_flow.Rd
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8b6f834b1761c5c317eb9392e5b6cc75 *man/rerun.Rd
9db426881f59bd3ef76d8db12c9b67c7 *man/run.Rd
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625e7e46387fce2f2ed2c6855f78cff4 *man/status.Rd
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6b4b42674ab53eb2f8d594f18456d458 *man/to_flow.Rd
46986a82043e0d9398b95ecc52aa4312 *man/to_flowdef.Rd
c6fd1e63a47cd621c8f129be2d36b808 *man/to_flowdet.Rd
33f136d3ef4f19d181af2ee95556284a *man/to_flowmat.Rd
34a37476dccef94737d6a405ecaffe06 *man/verbose.Rd
631dbcb489d0f3159459e53f9222a6d0 *man/whisker_render.Rd
ee331930c4789643cb7ff39d4eec9906 *man/write_flow_details.Rd
f192eb5012fa41630ece4997be979006 *tests/README.md
c61e556cc07168a9efe5a7140922b4b5 *tests/fastq_mutect_err1.def
17be68b59f520cfb60699886b01bfa4e *tests/testthat.R
34ee8c1705b695638c08c5048ab7754e *tests/testthat/test-plots.R
3922aec2a8acfbc83342e3c5b350cb9b *tests/testthat/test-toflow.R
51f63d1735a9f59bc459f5f1075cbb8f *vignettes/files/flow_def_columns.txt
13e9d8683f2ef6c072b9637b33c174b7 *vignettes/files/logo.png
45abdd680974ad1ae6130a5dda2adef7 *vignettes/files/platforms_supported.txt
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3f370793a8a8f43e4f9cd340d0af52ec *vignettes/flowr_install.Rmd
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