718d049cd65abe4a7343666674535cf7 *DESCRIPTION
c8fcd79420a1092ccf7579f5c835000f *NAMESPACE
cea7488c0912e3d8cea98ddccf5c536a *NEWS
4221498aeb2b94ba7f446eabedbe7714 *R/dataDoc.R
c2dd017a5a239350231f56fd1e40e0a0 *R/dynrCook.R
f52f85114439427b96f886de36de5892 *R/dynrData.R
1f39fa613bcfca8f1adf8884cd42b9bb *R/dynrFuncAddress.R
cfaf7549859cb02e1730058b6c23afd3 *R/dynrModel.R
637c4c3256565356899163388fd525bf *R/dynrModelInternal.R
dabee9c3a46c39cfa4bbd873a11d1c48 *R/dynrPlot.R
861de456bf0c04f28189385b37d8daad *R/dynrRecipe.R
8d8a870758977d6db7b7507356e3c738 *R/dynrVersion.R
63a2b3d53811033e637db22f83164071 *R/dynrVersion.R.in
b202b798e7271a3e1a24eefdcf7f2a1f *build/partial.rdb
2a2f823b986ebabb8a524a946d960277 *configure
6fc161dfc8c2abf9064e07069145dc6e *configure.win
ffa8e7e8e8beb364348e9248330b0baf *data/EMG.txt.gz
42d2093142d41f80a9c2ca1b6aea10a1 *data/EMGsim.txt.gz
d9dce7ea7e4d2e6377651492b4884571 *data/NonlinearDFAsim.txt.gz
d8969682d4594b8842f061c7c86da9cb *data/PPsim.txt.gz
c7ae98815490572d4f527b886cbea4da *data/RSPPsim.txt.gz
bd74b4994c4f7b04965fd467532d6af1 *data/datalist
9ec0c30f871d057a6106503ce2bdaa5e *demo/00Index
ac98053f08a1fd686311222f09925da6 *demo/LinearSDE.R
9ba5f310f697d5d9df3bb179cd36f47b *demo/NonlinearODE.R
a18526f6a76cce1655c93279d45c0632 *demo/RSLinearDiscrete.R
f1153356bd55ee0270f5139a0c166406 *demo/RSLinearDiscreteYang.R
027c18b51755dbbcdaf3345ffbd4ecf7 *demo/RSNonlinearDiscrete.R
0d369644089140dcb7378864c0ee85f1 *demo/RSNonlinearODE.R
e71266093722618174b4751cab01078f *inst/models/slow/MCTest.R
e730ecc8dcb0301136601b9553a25745 *inst/models/slow/RSODEmodel.c
d697566c3d23b29fd917fe49db8ca727 *inst/models/slow/RSODEmodel2.c
8ef3d488a81bce4d8471577d544253fe *inst/models/slow/RSlinearODE.R
e730ecc8dcb0301136601b9553a25745 *inst/models/slow/RSlinearODE.c
dfd436323879f09fb9c8ef44169d4d07 *inst/models/slow/data/Model2T1000n20batch1ODETrueRegimes.txt
7a3f661bf7ae7f53960740e634a7a329 *inst/models/slow/data/Model2T1000n20batch1ODETrueStates.txt
a8acec45b1d20fee4a868eebc9fce66d *inst/models/slow/data/Model2T1000n20batch1ODEsimData.txt
3b205070cd03ebac5f9f76bd89837a07 *inst/models/slow/data/Model2T1000n20batch2ODETrueRegimes.txt
21cf61480f4e0db723407e793184a536 *inst/models/slow/data/Model2T1000n20batch2ODETrueStates.txt
1907b6921c9d805b65226c2c7b18f55a *inst/models/slow/data/Model2T1000n20batch2ODEsimData.txt
ca49445b860c7fcd03b7b09cee1e2691 *inst/models/slow/data/New2CovT500n10batch1ODEsimData.txt
7128bd88e19bbdf6716ca23ed8212285 *man/EMG.Rd
be892d2292286fa613bda0094cc75efb *man/EMGsim.Rd
59ce9eac2ceadf3fb4e84e170d87955d *man/NonlinearDFAsim.Rd
e96ed728f23889a77638299296fb6f38 *man/PPsim.Rd
1e7f28082ce28ed296b62dcf1e011ad4 *man/RSPPsim.Rd
0d2c9d0ccb1e0963d99282862c279685 *man/coef.dynrCook.Rd
feb60ec40b302524b1993b7f5b12b1bb *man/diag-character-method.Rd
01477e3b6607279441ffe7cc80fc3024 *man/dynr-package.Rd
9bbea356b6c2f8ce06ad5ad9a8d1542b *man/dynr.cook.Rd
2ea419136d1ffaab5d987992c996d245 *man/dynr.data.Rd
764c29ab76992c3ae201208fd3220b9a *man/dynr.ggplot.Rd
0b1a16971952269709f09cb2d3b37e53 *man/dynr.ldl.Rd
4952e1ac3168edd96698b6eadb5963e6 *man/dynr.model.Rd
466f0e70ad0db574c90c6dcc83ee8a8f *man/dynr.plotFreq.Rd
3030627addfcfa4c140b589e10670481 *man/dynrCook-class.Rd
2654c1f840b270d51f8acbba772df262 *man/dynrDynamics-class.Rd
1d065135820d349695c7c619aa5d071b *man/dynrInitial-class.Rd
86fe316452d0857a26ceb958be43b78d *man/dynrMeasurement-class.Rd
5d085a7bb50571d5256ed0365744748e *man/dynrModel-class.Rd
025ad6198e7e4124ed187cf7db9ee792 *man/dynrNoise-class.Rd
53324a426df083bec45042137f12c9e7 *man/dynrRecipe-class.Rd
f4d6a514e8c2a31cc02cd642831f0036 *man/dynrRegimes-class.Rd
f7ad853c6571b101c236ebaad1e2a143 *man/dynrTrans-class.Rd
f4f30eec39e8562e373d62d555d181d0 *man/internalModelPrep.Rd
57e7339e0528c6c89fe3289b8330694e *man/logLik.dynrCook.Rd
8e9f67bb34ac2df2a319ff45b096125f *man/plot-dynrCook-method.Rd
81ca1b7a9f69c46d80d3ad309ccbca72 *man/plotFormula.Rd
07815b20e6944c3cd25f7778ef7b3159 *man/prep.formulaDynamics.Rd
cea36386fa61d5c5d7dff21919ac377e *man/prep.initial.Rd
17293fc80d58f4c91774b7cc73d54d66 *man/prep.loadings.Rd
42a06dd248ee7c9338192298273eb69d *man/prep.matrixDynamics.Rd
86a01eac375da51739ffe1f1fe927c4e *man/prep.measurement.Rd
e52c1e0364dacce0422108a30c9aa314 *man/prep.noise.Rd
a52fc3d913013ab6bd3540022a4dffd3 *man/prep.regimes.Rd
904f8d8633220bf9d42003062c852923 *man/prep.tfun.Rd
008744c04f5f6631557d0e62a16f1bc4 *man/printex.Rd
5952c7b218059a3c63b80f43364a0fe5 *man/summary-dynrCook-method.Rd
7957af0bbd2a1f6b8ff7423bbfbf6443 *man/vcov.dynrCook.Rd
27631498103b08980fc77fb027f309ae *src/Makevars.in
9ad2e7f37645e8bae554f2727cb35826 *src/Makevars.win
cd87bbd732e58fa299e8ddc9362f7537 *src/Makevars.win.in
cb3afcc107ca001e1a841e3058c7e9b1 *src/MakevarsGSL.win
fca6316261e9f2a2e76f70f4e0326ea5 *src/MakevarsIgnore
43f935651d16579dda9f5dc7cfd19a41 *src/adaodesolver.c
e9f1df8271427e034532757fd7948218 *src/adaodesolver.h
bd83bdd8d24d05acf4c8031c6667fc93 *src/brekfis.c
c6cf5f5c6808109c1a9cd1cc0d1bbaff *src/brekfis.h
d24e48042dada9d189bf5f4ade38c9c6 *src/data_structure.h
7ff8e0e77961fcb64c19fad638853773 *src/debug_onair.sh
c46261ee9047f43f539d7b42f888791b *src/debug_onmac.sh
d64a67094aef3f504230d5e34664144c *src/ekf.c
4258b4147e68e119b09149e2408042a1 *src/ekf.h
d898a8f861f4a3c935023af4ba5ee0ab *src/estimation.c
4d9fdae6f0f480cf787a54c81de70c7f *src/estimation.h
7790845d51f3c908b28602e2d236e627 *src/general.c
2f2983eba3d3c9a3405c63be07c14991 *src/glue.c
41f4b3148664ccaf0b570020d2fb536f *src/mainR.c
85a2174765401994b12d74867211b6d6 *src/mainR.h
4fbb2c75749da34f4cc66d508f64035b *src/math_function.c
08d072273bef8a274311b076cb064516 *src/math_function.h
9bb08148c25b9115b015618cb20910dd *src/model.c
e3595686f63b4676e96e30959c61c8f3 *src/model.h
fc1d67946a060243ac0f0ac75bc4da2d *src/neldermead.h
2a77df5d65c208d368fa7102f58fc891 *src/nldrmd.c
4b7910ec3200b81a25ad63c7ad1cf7a9 *src/nlopt-internal.h
2ff94eaad5eaed51d937d589eb673897 *src/nlopt-util.h
6c225833bcda94a97ea0466284ed1630 *src/nlopt.h
6e7cfc3ce4f1c7597ae59d83eb7fc254 *src/numeric_derivatives.c
f686cd3da928af978fab58d3d6991ac8 *src/numeric_derivatives.h
126ae09a41dbca7a51e05425033340a7 *src/optimize.c
1704e7888ca44a3aa0647ec3db7def2d *src/options.c
e3247fa742659d2d3eaa55f98159a6b5 *src/print_function.c
c95fafa07328434ee45b9f5bfb42a8b5 *src/print_function.h
533c2a9397de70a6c80c733ea0c3b26a *src/qsort_r.c
9914ae83064dfcd800182b253db48266 *src/redblack.c
908320b8131a3b49735bc933414bf1bc *src/redblack.h
973ec27866373b6d0337bef743f72f3a *src/runmainC_onair.sh
d65a8ace18e722b0f2c7647055cc6077 *src/runnlopt_onair.sh
8270bf070cb54b6c169e210510edb240 *src/runnlopt_onairwin.sh
7fcb98c63538e5e622decacb7deac1e4 *src/runnlopt_onmac.sh
5457a451a9d8fd14cc13deae0329a15b *src/sbplx.c
9036143892407b2e366e927e337c7072 *src/slsqp.c
a8379ca1ec5419136e85c9e036c495e6 *src/slsqp.h
e2f945871653acef7489996ca2f000c0 *src/stop.c
30eed01a128bfdb4403d9e36c012dfd8 *src/wrappernegloglike.c
417c73cdbb2fbcb6808ae9c7012b1ca9 *src/wrappernegloglike.h
b5f93d62614db4a11ee1361736ce9fe5 *tools/buildNum.sh
f11cb88b80d383ee81b933b8629c2188 *tools/configureAutoConf.in
3da4d854994ef2038b1d90dfedaf173e *tools/prep
efa1a6d7d916998d5131bce97f8a782b *tools/roxygenize
b4d57d694234f421c236f7994c3a878f *tools/testModels.R
