2d637c4cde08491f8b5caf48f8f69e13 *DESCRIPTION
fe20c3f966cb10636e8b2de9ce671ceb *NAMESPACE
8743e77cce4e35383d5b096b899c290f *R/ClassMethod-dcGOR.r
4004f9c85205d145bff45c04f41239c5 *R/dcAlgo.r
dbd1584a5d53edc20079a3330b113c78 *R/dcAlgoPredict.r
ea3b8818b1b3d95d02d111935bac1a1f *R/dcAlgoPredictGenome.r
cb4dc0b48822f7d175eb51aa625fe218 *R/dcAlgoPredictMain.r
c74a43ea30bd9770647cac19b3dd1b52 *R/dcAlgoPredictPR.r
4ee9ee7c3ea28b7757f6e6699c732c4c *R/dcAlgoPropagate.r
5a340ced0f32b367257eb52110bc58b2 *R/dcAncestralML.r
c61bb65b15b3152ee32949b4f9da8bea *R/dcAncestralMP.r
48d5fab708d560a9c0a9450fb386bb1f *R/dcBuildAnno.r
b01338c9fd13555dc2b6e5e2f0466f34 *R/dcBuildInfoDataFrame.r
af0b581a527ec93b5a293e24a11cd5a8 *R/dcBuildOnto.r
3208152943f71088f41d49587199a614 *R/dcConverter.r
d5e4c00cd040afecfff114a6c8c41d9d *R/dcDAGannotate.r
90d59d104f83dcc87a03cc9f42df596d *R/dcDAGdomainSim.r
78ed1744a9db0e0910b936784fca2261 *R/dcDuplicated.r
5dd2d3e56ea41613c6388b781a947743 *R/dcEnrichment.r
49a46b0e227e25a043ae21cbc6e1f9ae *R/dcFunArgs.r
3539a0eb2f1a00bf93553c0e110c2b28 *R/dcList2Matrix.r
ee482627c3755eb2912c695eb1a3473a *R/dcNaivePredict.r
e4d53b9f54005771f22c6c8198bda231 *R/dcRDataLoader.r
0921b15500e69b6c52c2866496acfda5 *R/dcRWRpipeline.r
13d30eee171ea69df73b06c84df9e8f4 *R/dcRWRpredict.r
ffb90652fd8e0fa12fdb12153f6a31b1 *R/dcSparseMatrix.r
6f80d194adbd66d480351a51f83741b8 *R/dcSplitArch.r
58e66a26c76c91274efc0aa5830f0a5a *R/dcSubtreeClade.r
69e7e4661b859c8adc27fae8f7eca435 *R/dcSubtreeTips.r
ee1a45d68a4c4651455ef5eecc64417d *R/dcSupraBetter.r
1395e178db3ca29f04b94a4d58d40c01 *R/dcTreeConnectivity.r
4442971bba48a311560755ad9d04a2e1 *R/visEnrichment.r
4a48cb40168458d5784cb0c0b922d018 *data/Ancestral_domainome.RData
7ec58938886d0896cd0d3f7d9584709e *data/InterPro.RData
c1e4121bf4e710696842dc5382423771 *data/InterPro2GOBP.RData
512bc8ac2bf5f1018df05004b2e02d0b *data/InterPro2GOCC.RData
720edb47981b2164930ffb612f6c3071 *data/InterPro2GOMF.RData
adb6d77b99e6270a8883a448bbef435e *data/Pfam.RData
fd33ae413289d21b72323ebe5c1a584a *data/Pfam2GOBP.RData
2e932ac923df3f3aee45407a63093396 *data/Pfam2GOCC.RData
a875d63d74607acdb06fcd1b23feef7e *data/Pfam2GOMF.RData
30c02a3e984277d26243b675ab3f8208 *data/Rfam.RData
e0b2c29d06e64c4e8c021ee587ab08dc *data/Rfam2GOBP.RData
e38e74d8a6e1746e3682b6e274a117b5 *data/Rfam2GOCC.RData
a8f2bd49b2ac571ff14fe8a29a1b1f06 *data/Rfam2GOMF.RData
eb8cd739243f5a95e2baf9bbad885620 *data/SCOP.fa.RData
0bcb9d46503a6062e31d0b0c420baa67 *data/SCOP.fa2DO.RData
cb584b94ccf28c2aeb8922826ee30575 *data/SCOP.fa2GOBP.RData
f2858e5eb59fa33553bd9e0f4e9c6606 *data/SCOP.fa2GOCC.RData
76c114e2af1bed29b4ddbc1d0790c681 *data/SCOP.fa2GOMF.RData
d88a27c099c45b41c9872cdf8f880bc1 *data/SCOP.fa2HPMI.RData
65a404ba654c87b893e6ba82feb01aa5 *data/SCOP.fa2HPON.RData
23b58ed0196c71478ca506c22aed2d4c *data/SCOP.fa2HPPA.RData
c2faaaa5bac419e9fd51020372d95c53 *data/SCOP.fa2MP.RData
a142627ca21f6a22512a44486a995c4a *data/SCOP.sf.RData
1bfd8a1788cbc37a692900cec34e567d *data/SCOP.sf2DO.RData
d58b62b5ca16f3c181aff831685b188c *data/SCOP.sf2GOBP.RData
062147620eb2cff387492ef9e393271d *data/SCOP.sf2GOCC.RData
85181227e3a9c16326a1b75ccf1422f6 *data/SCOP.sf2GOMF.RData
2e0ed1515da45d746d963703ae846060 *data/SCOP.sf2HPMI.RData
3bd5b8e6c0b5c048cd8ebeec869f34c2 *data/SCOP.sf2HPON.RData
6f71764ed31346e60b01ec769f7cc735 *data/SCOP.sf2HPPA.RData
f7a73efd08c43eb6b0c386ee220c4ff2 *data/SCOP.sf2MP.RData
d6c31c664042709d3077de4912a9b850 *data/datalist
35b06bf640fe05c863dac7522e2508ff *data/eTOL.RData
d0ddb5f060c4a9569e3387a141786b41 *data/onto.DO.RData
8cabbb8806ba89ed3aca00aafdbe6d95 *data/onto.GOBP.RData
9de14bacd1240a4d989db16c9bdeb92f *data/onto.GOCC.RData
6dfe973b58426cceb33c46433366eaea *data/onto.GOMF.RData
c3461441e3ebfa224e68d6cf4e6145b8 *data/onto.HPMI.RData
d5e6dd353127c6bd2b216582745b0a31 *data/onto.HPON.RData
2921b5ddeee588fc80a882151f9905aa *data/onto.HPPA.RData
d96df0765ad8fc7f9581d6a8947ecd79 *data/onto.MP.RData
1d2323604f3872f901155ebe9d9b041c *inst/CITATION
f4b2d77e5cda3b07a0984a213a09c491 *inst/NEWS
3f9a8affbec1a8952d54ff1fc130b756 *inst/staticdocs/CITATIONs.md
2fd85a23beb10cc6dfeb562f56fabca3 *inst/staticdocs/INSTALLATIONs.md
155e6c50687e0e259f248ac7a6c504a0 *inst/staticdocs/RData.md
b8ec794606b060890fba7f6328b37229 *inst/staticdocs/README.md
56eb9873e09bc037eff8019d087594ff *inst/staticdocs/demo/AlgoPred.r
c9434384bdaf2d1a666ab9ab17ed767b *inst/staticdocs/demo/Basu.r
7460e8dc95a432e1804126bb26c0500d *inst/staticdocs/demo/Customisation.r
d56d124488babab68d6f419ce323b0b5 *inst/staticdocs/demo/Fang.r
627ed509c08bac70b17e5995edb3b444 *inst/staticdocs/demo/Fang_paper.r
4cfe90bfe23653a919f72b6ee1f8241c *inst/staticdocs/demo/List_demos.txt
dee3bf204b504a0cde215b062a431c40 *inst/staticdocs/docs.r
d41d8cd98f00b204e9800998ecf8427e *inst/staticdocs/faq/List_faqs.txt
0b3e60f9c6c0ac802bf9a3135d1c5acd *inst/staticdocs/images/dcGOR_logo.png
0b3e60f9c6c0ac802bf9a3135d1c5acd *inst/staticdocs/images/dcGOR_workflow.png
84e97c3844131bcad77b59d2f339ec5e *inst/staticdocs/templates/footer.html
a3672d7a234184d26e2602a3893db364 *inst/staticdocs/templates/navbar.html
2037971837f06447aef1a0156ba7d3c3 *man/AdjData-class.Rd
88392da36fdef4172a4d36af35cf4e1c *man/Ancestral_domainome.Rd
df5d8fb0e0df84f2debdc94fa52771b2 *man/Anno-class.Rd
2939f1e64857fa5e201d4f9bd5a13ed2 *man/Anno-method.Rd
69a9df9638c3728c499adc17ae297a23 *man/AnnoData-class.Rd
e09f847aed4b1a25ccce185e460f6f02 *man/Cnetwork-class.Rd
f53b99c8366449da57945d270e737613 *man/Cnetwork-method.Rd
f8132a53379c0e4f8db6b8bd164ea11f *man/Coutput-class.Rd
b4cd7cfa44d912e3669ed9b95854c69f *man/Coutput-method.Rd
da31c3b376a0dc63b33ecc5a58342f6b *man/Dnetwork-class.Rd
c0f4683bc0a470fdf5f60ef8e02782b7 *man/Dnetwork-method.Rd
a1fd8599ad6043e2e344f134095b6c93 *man/Eoutput-class.Rd
ad021b112e2663192d23a47e02131ed3 *man/Eoutput-method.Rd
7f9c66265da418b02604fcf396b27c5f *man/InfoDataFrame-class.Rd
b3aa4c10b7db0c89d874a1170c863e33 *man/InfoDataFrame-method.Rd
c703525bbf7cf2ffb9b47720c2596d33 *man/InterPro.Rd
e51699e6380e11ee894fca1cf3e68299 *man/InterPro2GOBP.Rd
60482ad5fd699746296486bdd7726d15 *man/InterPro2GOCC.Rd
dd1f7d6aa593dd443726603a26ec499c *man/InterPro2GOMF.Rd
307d927b6f5275d1ffe9e9ee056ea3d4 *man/Onto-class.Rd
8a965eeb3af4932a5a035557f2e773a4 *man/Onto-method.Rd
d23503c08d035afd120ea058447f3a7d *man/Pfam.Rd
47b739db632cf5eeba32c545880d4bac *man/Pfam2GOBP.Rd
211cddb14aae86ca18b782b2e79ff498 *man/Pfam2GOCC.Rd
ca1af369adcf7da776224a04354c7215 *man/Pfam2GOMF.Rd
5e928ba432c47c8e51b8832eda4f921d *man/Rfam.Rd
b8663abb68bfa250689bbe12970591a9 *man/Rfam2GOBP.Rd
ac91250a0e00bd027ce3e4105dbdb3ec *man/Rfam2GOCC.Rd
a40f445c85b42a63640ce303acb08aad *man/Rfam2GOMF.Rd
f60cca5f4a0fdd7fec34412b25c1e328 *man/SCOP.fa.Rd
2770d56909fc630a912f7787d42ac32a *man/SCOP.fa2DO.Rd
17e76c72016a9db8db1343f370404f3f *man/SCOP.fa2GOBP.Rd
efe9add8ca005720f481b675d98e3915 *man/SCOP.fa2GOCC.Rd
5cd07ec054a0ad707f57931f8414587b *man/SCOP.fa2GOMF.Rd
39961eb244ba5006a3833908f3b58da2 *man/SCOP.fa2HPMI.Rd
810ac1f5c01f5df9fa2f21ac2ad5c41e *man/SCOP.fa2HPON.Rd
1fb776d1f9f07dc1dc5ecf0e45a26a3a *man/SCOP.fa2HPPA.Rd
38f5827d4def73860253406527efa378 *man/SCOP.fa2MP.Rd
5eb622ef7138883c9fdd626a6e0aafba *man/SCOP.sf.Rd
3200e99c2c320cecd36b8aeb13196c00 *man/SCOP.sf2DO.Rd
6f81cd233b4684a4ff83a2b76a5b36a2 *man/SCOP.sf2GOBP.Rd
8a672f6934a1de685e6526270dd6d581 *man/SCOP.sf2GOCC.Rd
6c21904de7d26605a7136a3384cba6be *man/SCOP.sf2GOMF.Rd
bc0ee84ee61608e1a5b8c28955582063 *man/SCOP.sf2HPMI.Rd
89da7b6ad784d7cfad4ae34497d91c5f *man/SCOP.sf2HPON.Rd
af5dec3b754d8761759d7a67f0e9b6db *man/SCOP.sf2HPPA.Rd
ba7fd1b67ec8241757ffcebbdbf676af *man/SCOP.sf2MP.Rd
7358cc306981588a30820172b7d5b84a *man/dcAlgo.Rd
a553e82533f14b63fa7746dcd15edf07 *man/dcAlgoPredict.Rd
6c7990e8445014f0b4444ee372af423c *man/dcAlgoPredictGenome.Rd
2ae43afd4687aa273871c63dec7cfa4d *man/dcAlgoPredictMain.Rd
15d8eee087d3da15ac28ecfde2ee9401 *man/dcAlgoPredictPR.Rd
cf54e9381610f0f794bd89d6fc274176 *man/dcAlgoPropagate.Rd
49b6c7a48050cbd34951a9ba4034a4ec *man/dcAncestralML.Rd
b7f59dec04b25ac5a87dcf4e5a741748 *man/dcAncestralMP.Rd
21490d94d454044c92d04a1f2c5ddf11 *man/dcBuildAnno.Rd
f9ed7ffb69659767354d419b5f063b6d *man/dcBuildInfoDataFrame.Rd
ef3108b7b36e3752897533461ac13a32 *man/dcBuildOnto.Rd
4e8e483212ebc67dd91fa5a01f7e7cf6 *man/dcConverter.Rd
ae16814af069239bd429fa29d0352d46 *man/dcDAGannotate.Rd
de2c40e7f2cb6cae6ddafd0919d0d0f5 *man/dcDAGdomainSim.Rd
0153521a16d16c105b8c13dfa223bcc4 *man/dcDuplicated.Rd
9680090df4a42c6a545514c7f88643af *man/dcEnrichment.Rd
d6b0beffa1e52e97e320acd2d5eb4e74 *man/dcFunArgs.Rd
7a1c6f2b876a6c15ce33790b55504d4d *man/dcList2Matrix.Rd
7bb3eb8120f834348da88ad09ef0bffc *man/dcNaivePredict.Rd
0898c8e22f0401a576a88b65470d2a06 *man/dcRDataLoader.Rd
f1068c5c810a919c0ab0e98fc95a67e9 *man/dcRWRpipeline.Rd
4115caf3c0e1984d39ccddfcb3e9cb6f *man/dcRWRpredict.Rd
1ab3ef754377de4c42bce54459601462 *man/dcSparseMatrix.Rd
c7209ba9badd9b10b7ffc8c26c0d7a4d *man/dcSplitArch.Rd
a96bcca3e1bc3d923df8b7403b24084c *man/dcSubtreeClade.Rd
0c87bf7f4aabc8cb86abb8c2610c6b0e *man/dcSubtreeTips.Rd
30d974e3f8926b73849c7bd3bf88dac6 *man/dcSupraBetter.Rd
1b1d6cb0b2f1f58ce0aff4c7a4c3e2c4 *man/dcTreeConnectivity.Rd
ae1de833e823f99dd26093da7bc06d95 *man/eTOL.Rd
699bde91e5dbfaea06349fff886edc72 *man/onto.DO.Rd
d1bec783105710d94bd3b1a811628bde *man/onto.GOBP.Rd
332623f259ab449913890f982cc77831 *man/onto.GOCC.Rd
52c5b3e3a29d03a3797c304b46ad5821 *man/onto.GOMF.Rd
7f12ac2224e419ea01ab8b73132f0106 *man/onto.HPMI.Rd
156fcea44cfc818b496e857b54e791c9 *man/onto.HPON.Rd
9e0ae4dfe8ba3019217f73c8660e6138 *man/onto.HPPA.Rd
d1c2be635a691218ac9f6b1276b4b6ae *man/onto.MP.Rd
5fb9de45d42cba71f47811348c4e47f0 *man/visEnrichment.Rd
