30d354d7a81c4e6b6cc89d73d90e6f12 *DESCRIPTION
097d060735ec72a9dfbd68f6399dabae *NAMESPACE
5c0eb115ba27ea970108be202a57f720 *R/ClassMethod-dcGOR.r
ddfb71c5c163cc78942d6a357bf821ea *R/dcAlgo.r
c1ad25eeb1c584fd85b9578849d805ae *R/dcAlgoPredict.r
f5fb4afbe10a19ed3e3bf73b6b949cf2 *R/dcAlgoPredictGenome.r
fc22e31aca8933f73ba48091842fbdf0 *R/dcAlgoPredictMain.r
54d48879d9d120e1bf92577235c12601 *R/dcAlgoPropagate.r
5a340ced0f32b367257eb52110bc58b2 *R/dcAncestralML.r
c61bb65b15b3152ee32949b4f9da8bea *R/dcAncestralMP.r
d9e1806d1e8b6fbd3d8250c6ed977aa8 *R/dcBuildAnno.r
0c30ba5ded9721aa0ce4af40a0255170 *R/dcBuildInfoDataFrame.r
982de96b602ee6b428ab6487a0c26151 *R/dcBuildOnto.r
3208152943f71088f41d49587199a614 *R/dcConverter.r
d5e4c00cd040afecfff114a6c8c41d9d *R/dcDAGannotate.r
741c5dbb657b1a11c8e01053b66f1140 *R/dcDAGdomainSim.r
78ed1744a9db0e0910b936784fca2261 *R/dcDuplicated.r
9dc80b59e2c7cd41eb96cb35b3d703e5 *R/dcEnrichment.r
32fcc8ae50937c24f741554e9e1bc718 *R/dcFunArgs.r
209f8a8cc21b6d60758fad4d7f2f3e61 *R/dcRDataLoader.r
af4560ffefb83d7adacb4af0f7a47247 *R/dcRWRpipeline.r
5f27bfee5c34a4f73e4181ab1a01322d *R/dcSparseMatrix.r
6f80d194adbd66d480351a51f83741b8 *R/dcSplitArch.r
58e66a26c76c91274efc0aa5830f0a5a *R/dcSubtreeClade.r
69e7e4661b859c8adc27fae8f7eca435 *R/dcSubtreeTips.r
1395e178db3ca29f04b94a4d58d40c01 *R/dcTreeConnectivity.r
4442971bba48a311560755ad9d04a2e1 *R/visEnrichment.r
62268b1e787336a0d13e1f81eab4448a *data/Ancestral_domainome.RData
4716e50b5d0f9e745720d181407fa205 *data/InterPro.RData
b8c4eef37614afa4958425d275bb485e *data/InterPro2GOBP.RData
76b9cc242048c7ed5fa4cc487593792d *data/InterPro2GOCC.RData
96884e9990d2ae68490a480ed42722e1 *data/InterPro2GOMF.RData
09f24afc17f824078b7c83ea38d5c606 *data/Pfam.RData
b81e3278a4ffc4cb85b1034fdacae2c0 *data/Pfam2GOBP.RData
6644ce1996d75eaffaaaaa24e68c8534 *data/Pfam2GOCC.RData
3872723e5d617f0f3a1960ee913e0c76 *data/Pfam2GOMF.RData
4d645a34371678a87be23d5e593dfe6c *data/Rfam.RData
266a978ebc29e1675a3aefe7453d3984 *data/Rfam2GOBP.RData
15a46d876ee74d3dda138f3509d000f9 *data/Rfam2GOCC.RData
bfb531df101fb7bcfce5f1e6024898cb *data/Rfam2GOMF.RData
1dc60fc67f8adf19582242aa77587c62 *data/SCOP.fa.RData
42297fb9bc4936bc5f949bd651a74039 *data/SCOP.fa2DO.RData
5861f8c73453d3f33c31a9eb072c9a5e *data/SCOP.fa2GOBP.RData
919df0e16707c6e25d873d554c8192d6 *data/SCOP.fa2GOCC.RData
a19a5e0bc1f32db82ca2a31f27cda8b3 *data/SCOP.fa2GOMF.RData
cf0f81fb2367dad8c970389c605270ce *data/SCOP.fa2HPMI.RData
6dd9d8cb79812469399d461835dcb546 *data/SCOP.fa2HPON.RData
4c8ed393318a8b8182b562a06379aae9 *data/SCOP.fa2HPPA.RData
a00b03b61a2b2b8147f747104c16a7af *data/SCOP.fa2MP.RData
f0de91ceca836b905d2eae49b79e7c29 *data/SCOP.sf.RData
ec70f86802fcd864028be4f8e7508f99 *data/SCOP.sf2DO.RData
0c9206e2e9ccfef26457d94161ce1a00 *data/SCOP.sf2GOBP.RData
733b26dc67f0ffec6e3fc2d86de1aaf4 *data/SCOP.sf2GOCC.RData
6698f8a3b31e339e653f8294f2bb2ceb *data/SCOP.sf2GOMF.RData
10fd4565fd857ae6a8b3a35a86b5c1de *data/SCOP.sf2HPMI.RData
8bf054755559d385d353d8e2d1feebe1 *data/SCOP.sf2HPON.RData
1137eeef7d7bc3c72cb0b99047640fdb *data/SCOP.sf2HPPA.RData
585f0833eef77225b20953340f452b0c *data/SCOP.sf2MP.RData
d6c31c664042709d3077de4912a9b850 *data/datalist
e54438e333f84166fb9882b30ea29111 *data/eTOL.RData
a70577a8f4d67214857cdbc7f87e490b *data/onto.DO.RData
4b6174dd17d1910bb4515d2faba6ef75 *data/onto.GOBP.RData
3a8390958048c07ca9c2361aa9d11a36 *data/onto.GOCC.RData
d25b9cb1b6eafb2abc21c3db4830faa1 *data/onto.GOMF.RData
68e8aff8e1dc985f733074e8f11e1c80 *data/onto.HPMI.RData
9676b9d9df48596a6a30fbc3853c0dd2 *data/onto.HPON.RData
5c7a06f74a9352ac26416d6ac46e5259 *data/onto.HPPA.RData
366c52e0f240c8b0c6ebdf2a4b85b683 *data/onto.MP.RData
1d2323604f3872f901155ebe9d9b041c *inst/CITATION
18384b679e37b5dce8ba8b39a63b7033 *inst/NEWS
3f9a8affbec1a8952d54ff1fc130b756 *inst/staticdocs/CITATIONs.md
26abd73b82ddd0d4b2809a6d9affa3e0 *inst/staticdocs/INSTALLATIONs.md
155e6c50687e0e259f248ac7a6c504a0 *inst/staticdocs/RData.md
80bae149cd43bcb05a2b83265f14c2a5 *inst/staticdocs/README.md
c9434384bdaf2d1a666ab9ab17ed767b *inst/staticdocs/demo/Basu.r
7460e8dc95a432e1804126bb26c0500d *inst/staticdocs/demo/Customisation.r
d56d124488babab68d6f419ce323b0b5 *inst/staticdocs/demo/Fang.r
627ed509c08bac70b17e5995edb3b444 *inst/staticdocs/demo/Fang_paper.r
f5907c5c2500021470cfd17f7ddb36ff *inst/staticdocs/demo/List_demos.txt
838d4a1859db3db9b47bba7d751320cd *inst/staticdocs/docs.r
d41d8cd98f00b204e9800998ecf8427e *inst/staticdocs/faq/List_faqs.txt
0b3e60f9c6c0ac802bf9a3135d1c5acd *inst/staticdocs/images/dcGOR_logo.png
0b3e60f9c6c0ac802bf9a3135d1c5acd *inst/staticdocs/images/dcGOR_workflow.png
ff47a533db508081d87765d36d9ff42c *inst/staticdocs/templates/footer.html
a3672d7a234184d26e2602a3893db364 *inst/staticdocs/templates/navbar.html
b6dcd485cadc9ebc391599b54bc8bac7 *man/AdjData-class.Rd
88392da36fdef4172a4d36af35cf4e1c *man/Ancestral_domainome.Rd
c6096e448a56e3bfce001943375e83bb *man/Anno-class.Rd
57d6b008b8734ab155c18e906a458ebf *man/Anno-method.Rd
dab1f902f43fb2aead1b6b77d1c7491b *man/AnnoData-class.Rd
30941987900202aa92f4f7d167b46866 *man/Cnetwork-class.Rd
30ebcb0db5fc881e2f178c731d140a99 *man/Cnetwork-method.Rd
f02b3ecb0f353a47d82cf64f1ee839fd *man/Coutput-class.Rd
55c3da6cdee102c776476be8aac2a489 *man/Coutput-method.Rd
1514431028e0e5374386f76f0fd3d77d *man/Dnetwork-class.Rd
30e3ff5f4b21df6b248b6880cf912f0c *man/Dnetwork-method.Rd
dfd11e698f763cc1a238c5371a2eb90c *man/Eoutput-class.Rd
00cd87820d6ca3010d79efa14295a671 *man/Eoutput-method.Rd
90e4fc7cc860a31c2b426dafdcd39735 *man/InfoDataFrame-class.Rd
c1ec3073ffb5bbbedf45302ffde2fc6b *man/InfoDataFrame-method.Rd
c703525bbf7cf2ffb9b47720c2596d33 *man/InterPro.Rd
e51699e6380e11ee894fca1cf3e68299 *man/InterPro2GOBP.Rd
60482ad5fd699746296486bdd7726d15 *man/InterPro2GOCC.Rd
dd1f7d6aa593dd443726603a26ec499c *man/InterPro2GOMF.Rd
cd546340efdbd1d6cb0081fdc3c4a671 *man/Onto-class.Rd
fab8122789f4542f31ad3a91f12e2dc6 *man/Onto-method.Rd
d23503c08d035afd120ea058447f3a7d *man/Pfam.Rd
47b739db632cf5eeba32c545880d4bac *man/Pfam2GOBP.Rd
211cddb14aae86ca18b782b2e79ff498 *man/Pfam2GOCC.Rd
ca1af369adcf7da776224a04354c7215 *man/Pfam2GOMF.Rd
5e928ba432c47c8e51b8832eda4f921d *man/Rfam.Rd
b8663abb68bfa250689bbe12970591a9 *man/Rfam2GOBP.Rd
ac91250a0e00bd027ce3e4105dbdb3ec *man/Rfam2GOCC.Rd
a40f445c85b42a63640ce303acb08aad *man/Rfam2GOMF.Rd
f60cca5f4a0fdd7fec34412b25c1e328 *man/SCOP.fa.Rd
2770d56909fc630a912f7787d42ac32a *man/SCOP.fa2DO.Rd
17e76c72016a9db8db1343f370404f3f *man/SCOP.fa2GOBP.Rd
efe9add8ca005720f481b675d98e3915 *man/SCOP.fa2GOCC.Rd
5cd07ec054a0ad707f57931f8414587b *man/SCOP.fa2GOMF.Rd
39961eb244ba5006a3833908f3b58da2 *man/SCOP.fa2HPMI.Rd
810ac1f5c01f5df9fa2f21ac2ad5c41e *man/SCOP.fa2HPON.Rd
1fb776d1f9f07dc1dc5ecf0e45a26a3a *man/SCOP.fa2HPPA.Rd
38f5827d4def73860253406527efa378 *man/SCOP.fa2MP.Rd
5eb622ef7138883c9fdd626a6e0aafba *man/SCOP.sf.Rd
3200e99c2c320cecd36b8aeb13196c00 *man/SCOP.sf2DO.Rd
6f81cd233b4684a4ff83a2b76a5b36a2 *man/SCOP.sf2GOBP.Rd
8a672f6934a1de685e6526270dd6d581 *man/SCOP.sf2GOCC.Rd
6c21904de7d26605a7136a3384cba6be *man/SCOP.sf2GOMF.Rd
bc0ee84ee61608e1a5b8c28955582063 *man/SCOP.sf2HPMI.Rd
89da7b6ad784d7cfad4ae34497d91c5f *man/SCOP.sf2HPON.Rd
af5dec3b754d8761759d7a67f0e9b6db *man/SCOP.sf2HPPA.Rd
ba7fd1b67ec8241757ffcebbdbf676af *man/SCOP.sf2MP.Rd
6d66347f590af1b3786fcf5d22f2dc65 *man/dcAlgo.Rd
92cd3c737623ba84bb9d5a11f676f53c *man/dcAlgoPredict.Rd
d90fecc267336380f84760c51a17bc65 *man/dcAlgoPredictGenome.Rd
61fa2262c1eb6cc36d00bbde844a3360 *man/dcAlgoPredictMain.Rd
b8f1a4d22622731107fae81361c03f12 *man/dcAlgoPropagate.Rd
bec73aeed870e4175db3e5bf6540f0e2 *man/dcAncestralML.Rd
2b3a75a484b60f93927d400b68918106 *man/dcAncestralMP.Rd
00b856c3bf29b441bf5e8055f748f027 *man/dcBuildAnno.Rd
751be4f789d2f19e08453459868ee0c3 *man/dcBuildInfoDataFrame.Rd
cb69e045dead9e0b49f7e8196e1de702 *man/dcBuildOnto.Rd
a75c96335d63ef35a34df463a93eae4a *man/dcConverter.Rd
b3e0f7ac6744b998f1925fe0755eb255 *man/dcDAGannotate.Rd
f29bd6d14323c66943e9ab6f7724e59b *man/dcDAGdomainSim.Rd
f9092da54a3270323b22ba7189ef3efe *man/dcDuplicated.Rd
4fdc0ee9328390ef88dd4ddc2a727bf2 *man/dcEnrichment.Rd
c19c0d229633770a44f45ea138b6c1fb *man/dcFunArgs.Rd
56d32daef6a99f1d45d6c341b9d450d9 *man/dcRDataLoader.Rd
9073832279b7893c42136eacc3d7b4f9 *man/dcRWRpipeline.Rd
fdf7ea5288ba6c4f521c8571809512e4 *man/dcSparseMatrix.Rd
aad4736f7d156a59feefa29dd5f30645 *man/dcSplitArch.Rd
0aa6e2cb40f9a0b47b1096e691486e03 *man/dcSubtreeClade.Rd
195b1b29eb5206fcde7128f65bf05464 *man/dcSubtreeTips.Rd
50f586da1f202ee66a7a641126f5fe83 *man/dcTreeConnectivity.Rd
ae1de833e823f99dd26093da7bc06d95 *man/eTOL.Rd
42845a63374751f89d9e434933fa701f *man/onto.DO.Rd
d1bec783105710d94bd3b1a811628bde *man/onto.GOBP.Rd
332623f259ab449913890f982cc77831 *man/onto.GOCC.Rd
52c5b3e3a29d03a3797c304b46ad5821 *man/onto.GOMF.Rd
cef428ab5dcd8384be34526d6fd0ad7d *man/onto.HPMI.Rd
9aa262c150028f5389e537e94ba16c19 *man/onto.HPON.Rd
da8229fca635e321c78763561bab20aa *man/onto.HPPA.Rd
c4c03803d9ace2885bb9b91a0d7ae7be *man/onto.MP.Rd
cabd39e7ff84426ae8e4d6e73c40b266 *man/visEnrichment.Rd
