6fbca50fc071f8570fddcfad186c21ec *DESCRIPTION
80abb79bc742316cd27c4c829a0eeb26 *LICENSE
0a8c5fd21a9c942e5bbc18192db54c95 *NAMESPACE
f3b5c633deb6dbf171d7d37e98ca4acc *R/bot_halfeyeplot.R
797b0d16660dcd4975be5980539c8f7f *R/clustree_viz.R
02f96b408a75410f54dedc454548a9b2 *R/crosshap-package.R
fc3ae2564ab1606006ab8ebaf50ee25e *R/crosshapviz_wrapper.R
0f8a417669d624783adac15f13939359 *R/data.R
725db263ff0a7191b11fd1d1992aae5d *R/left_alleleplot.R
8371210d6ffd76d6a7d0c3e2378f2246 *R/left_posplot.R
aead902af9d4032313e836b379bf0235 *R/mid_dotplot.R
f8fa6297d963c0f728f05c1857d2e045 *R/pseudohaps.R
5c3fd84207442c2d762551ce51b2ccca *R/right_clusterplot.R
cb8646eb89fedbfbfd03e2468c414478 *R/right_phenoplot.R
ed535a5c2dc6b465e397d2f66bc29260 *R/run_haplotyping_wrapper.R
f74076b458ad717f2939a7bfbbf6e027 *R/run_hdbscan_haplotyping.R
539bcd6f0325fbd9e013cf9f82e1f2b3 *R/summary_tables.R
4eba3af0590c122db9c9aeb88c6dcdea *R/tagphenos.R
6f092696cca06232531be6143c4a1b55 *R/top_barplot.R
a53cf12935f13aa80cfc9573a74040bb *R/umap_wrapper.R
b56ff2b193ecba52f9ec7f3b10cca008 *R/utils-pipe.R
6b29657b0be7a3c182f3754ed92febb5 *R/utils.R
dc48d95b4ea3d2af0d490fe5d058585c *README.md
ea124a494ad7922985532ad3b308e4d5 *build/partial.rdb
33a6d2f4969e7ddbe4d750b5d55cc1a0 *data/HapObject.rda
0d22de50546da996b11dbc01bbbdce2b *data/LD.rda
e45f00e4e6939e708585b5f092c2b8e4 *data/metadata.rda
6c65dc8e4b6bf87f4c3c5cec917ff86b *data/pheno.rda
84631ce1622826d096da74efa81514ee *data/vcf.rda
4c4d23f63a1d476103cdba29b25e2e43 *inst/bin/prototype_viz.R
2177e4acfe0fa5183c098d274c695c51 *inst/bin/pseudo.R
fcfbc37aba67028c7e4d8789a1907828 *inst/bin/pseudo2haps.R
7b1c52bf192287d9c3901e7c7f86812a *inst/bin/snps2haps.R
3537c10c2e96cfb9a1d8259fcd5bfc13 *man/HapObject.Rd
9b78b1ce6c048b340aded44e450e25d7 *man/LD.Rd
e1cae031fd282680337911a1176d592e *man/arith_mode.Rd
3ebdc1d86c7f0407bcac675525968c4b *man/build_bot_halfeyeplot.Rd
1645c5df2bd36626109b5829ac85cbdb *man/build_left_alleleplot.Rd
3fb8ecfcef2a2020948c7e39a4ac1b1d *man/build_left_posplot.Rd
a00d8c4b9a937dc769dd17bf5d0003df *man/build_mid_dotplot.Rd
876dc6d6694b46f11876c87453b34d55 *man/build_right_clusterplot.Rd
a0a1217771c9175f1fccd10444e7f338 *man/build_right_phenoplot.Rd
591bf64c08e6f2bb170edf5a736f6bc2 *man/build_summary_tables.Rd
ef1982b605ea1866c999800721917e27 *man/build_top_metaplot.Rd
255863e8379d710000ec7acb54285d82 *man/clustree_viz.Rd
887f4a685d975ccc9a0d67d1f18b18a3 *man/crosshap-package.Rd
90ef863fcffe26087d7453ddabf6043b *man/crosshap_viz.Rd
32cb276b6dcaf4f2afe9e06868a42cfa *man/figures/README-pressure-1.png
72af64572f7ec84235e017248e82f473 *man/mean_na.rm.Rd
6c4b3924d5054a12daccc3145ad3aaf8 *man/metadata.Rd
9ce8b6fda1df03cb30c236c61aa7cda2 *man/pheno.Rd
774d9de8e95aa151215efcd304549d41 *man/pipe.Rd
ec582979e8802232dd5ba1618050b5a6 *man/prepare_hap_umap.Rd
e69a395827490d61b69062254591ce8a *man/pseudo_haps.Rd
5be89bcc000db571caeed444fc061699 *man/read_LD.Rd
3f3ff3f8f2a87b7529f1807e3e8aa432 *man/read_metadata.Rd
52aacb89055a97555fcf4dbc7cb62764 *man/read_pheno.Rd
531e3788b45172f5a9d71b1d9e5a8491 *man/read_vcf.Rd
b7cd8da7e803c94d9743017dcc9b9804 *man/run_haplotyping.Rd
5012384e8bc73a3baf70497697666c80 *man/run_hdbscan_haplotyping.Rd
3a9f3cd8142673106cc7407e81cc54c5 *man/tagphenos.Rd
9a5d379c3e0139911a308c800e6be0ac *man/vcf.Rd
03ac03928ce4f3821db3f52f141b1bff *tests/testthat.R
c3076d0d3b096242ac68e82b946d531a *tests/testthat/_snaps/clustree/haptree.svg
d41d8cd98f00b204e9800998ecf8427e *tests/testthat/_snaps/clustree/mgtreedata.svg
aabd527696a7ac25f8a3c325052804c4 *tests/testthat/_snaps/hapviz/haplotype-viz-alt2.svg
34c271180f7d1411b2ccb511c3eb68e6 *tests/testthat/_snaps/hapviz/haplotype-viz-isolatewt.svg
c22922dd79532a4e6b7e6a1272ea7551 *tests/testthat/_snaps/hapviz/haplotype-viz-nolabs.svg
124965e16a6db9532391de5bcca042b8 *tests/testthat/_snaps/hapviz/haplotype-viz2.svg
1483224816feb89109a96d8e7f40eb9c *tests/testthat/test-clustree.R
49443657a2d97538c5fd192232c30601 *tests/testthat/test-haplotyping.R
42fb69e1128e3675dbc82de97a4f771c *tests/testthat/test-hapviz.R
e0a2f00c62af66c281e57f896a97b8de *tests/testthat/test-umap.R
