0495b9c520f48e1083cb9ccb92eeb00a *DESCRIPTION
c64d89bddecfe72b35703e78bfbfaa21 *NAMESPACE
c7815472ea52e17167f99facca14e3ae *R/HDIbetabinom.R
b6e2828ddb32093d97808f58dbcfe801 *R/bbdml.R
64b5f01e2e663bad9f92bc80ccba7276 *R/checkNested.R
841b2ad05b35554504de0cbdddfb94fa *R/clean_taxa_names.R
b595a627db076a1c64ceb91d7b43ab7d *R/contrastsTest.R
8dc7d0d7d2502752333657aff0788106 *R/convert_phylo.R
6e47a512f4f5cd65af5c082cd05e1cbb *R/corncob.R
4922165f9229b6b6cefc8dd4ad6ceae7 *R/dbetabin.R
f3cb65c2032a390d314fc89fad64580b *R/dbetabinom_ee.R
d2fee2c21dd25544d7f68187de3f2a35 *R/differentialTest.R
08780664f006cd1d6bf71d6b31331cd4 *R/doBoot.R
f280bf0867c64774b2400ec806d7b8c9 *R/genInits.R
beb3561ba45614031fe6d2575170564e *R/getRestrictionTerms.R
d431f79e59cc848c022f5fbc20ff49be *R/gr_full.R
158493727d04513983eecb27d089c1a0 *R/hessian.R
b77a2d9e9e2bf0dc970a865e921c60d8 *R/ibd_phylo_otu.R
724c5fbfd94d88ec708ca1a9aeda7eb9 *R/ibd_phylo_sample.R
a7642170551e5a7272cd504d28b2d2e0 *R/ibd_phylo_taxa.R
48699fbb7c3344b066726012914f1e42 *R/links.R
67bafe23553d77878b1cf240ac0c5fb4 *R/lrtest.R
5bba6f9bf20c703ddf516a9a9363009b *R/objfun.R
60e411adb67e24b130a576cd28cd200d *R/otu_to_taxonomy.R
c5b6293f9be1bc70f320e6842d60f0ba *R/pbLRT.R
2aaca8b56c8038d0ccb32032328e21fc *R/pbRao.R
f21bf92295a914da22b9792c5bba4b9b *R/pbWald.R
7b65438f4765913b384a07fcfb5b57a5 *R/plot_bbdml.R
8cd306fe89bd2aa484cd795a54cff0b3 *R/plot_differentialTest.R
00ba14c5e99b947ded9a7a7cfdbcebaa *R/print_bbdml.R
1ba9cf6091a99717edfd9f7d809bc746 *R/print_differentialTest.R
1511e34ed1f5fc1ae7ae246ea98c4354 *R/print_summary_bbdml.R
0fe79b30b8cc252ed349a75762c0c80c *R/qbetabinom.R
a4321c2f473ed8a85bfa6ddeab20e229 *R/rao.R
e6352b60d501392464eb3abebd2b0fd7 *R/sandSE.R
ce3b4c7190583c708b0398e7b98c7a52 *R/score.R
06fdfd4ebad5cb3aa177231109d5e2f2 *R/separation.R
50227d4258e8eb8e1f255562bbd152a3 *R/simulate.R
ae2683f6bc17392f5801682c331bcb39 *R/soil_phylo_otu.R
67e49b53b5e24943fc5c984f14ab5776 *R/soil_phylo_sample.R
6936ca41ef643cd44672bafb41ba632e *R/soil_phylo_taxa.R
fc13eae4c0b806a4378eed438d34557f *R/soil_phylum_contrasts_otu.R
66a64ee38e4884f498bdea250c2f7b34 *R/soil_phylum_contrasts_sample.R
28334892aec919c69e828c4c2da18ac0 *R/soil_phylum_small_otu.R
372043fe1465c7dfea4980325a610790 *R/soil_phylum_small_otu1.R
e89605d2f9c2a6033f0dc8b362ac5ec2 *R/soil_phylum_small_sample.R
c16b4aaddf8552685b00e399ec9ebd32 *R/summary_bbdml.R
f46eee89eb79508ed86c64cf61526f57 *R/utils-pipe.R
4cb45fe5a1bfcc938339da59f9299180 *R/wald.R
6d817a346e11f6fc583f08be222f5fde *R/warn_phyloseq.R
391b55070e07b7cb0ac9e90dbbb8a337 *README.md
662a030c51caabdf3cae6e84dd34084f *build/vignette.rds
b58e574cb4e021f7dc7dd5e9242c15c9 *data/ibd_phylo_otu.rda
4b7966915374872e49706b5677177b85 *data/ibd_phylo_sample.rda
70474361b3a2f6f55615e95960dcaeab *data/ibd_phylo_taxa.rda
fdca6f43c493a69a4e0413f86cdef7d8 *data/soil_phylo_otu.rda
e3ffd6e76bdae92445afdf5a843fafa6 *data/soil_phylo_sample.rda
f448904a2caf4f640fd1532a99d92f3c *data/soil_phylo_taxa.rda
fa5d0c37ac223796d8ed1a1162940427 *data/soil_phylum_contrasts_otu.rda
b0cd8f47353d6a71db487a98aa97e5b4 *data/soil_phylum_contrasts_sample.rda
067d10e7156ce7a05e490d1dcdbf7e70 *data/soil_phylum_small_otu.rda
6a55e4bfa67ef2f7dca85954a89c9129 *data/soil_phylum_small_otu1.rda
e6009fb34a9a7f2686c7202114997861 *data/soil_phylum_small_sample.rda
f3392ad3ec28c2a06de38326b6549fc4 *inst/doc/corncob-intro-no-phyloseq.R
f3052ccbd37c64ec62ac07c18bfc73d0 *inst/doc/corncob-intro-no-phyloseq.Rmd
c1f2558437055f7ef482ebc1d1793a1d *inst/doc/corncob-intro-no-phyloseq.html
4d71ff6a932868fa7dd5a1e6d98c850f *inst/doc/corncob-intro.R
f9c13af0914969f3f23ae835d72e49bb *inst/doc/corncob-intro.Rmd
92cb109737e28142adc11a513872b33d *inst/doc/corncob-intro.html
1de48a469e9cddd79540c1cc16531da0 *man/HDIbetabinom.Rd
3fb3e37aaaf8fa7887a18a2b77a1bebf *man/bbdml.Rd
10c4c438531df8df058216d294e613be *man/checkNested.Rd
da4e9a68fff71dc393f549204fe0c5e2 *man/clean_taxa_names.Rd
216419d8445e16f5ac3dd49549dd97e7 *man/contrastsTest.Rd
7be07df1179276e6c6c1a4c0128fdee7 *man/convert_phylo.Rd
f1a54f4db16b31a4eec96c00643329d9 *man/corncob-package.Rd
3184ac37aad0f43ca8bbfe68545fdae2 *man/coth.Rd
a45ea75083a07c4d404c9e6aee60cd30 *man/dbetabin.Rd
151ca938630247f9a445a51e8c5b98d8 *man/dbetabin_neg.Rd
0a99f79435d2088b4b9f49679b11463a *man/dbetabinom_cts.Rd
23085a909d598392b462516536e201ee *man/differentialTest.Rd
82460bf79a11f5f687dd51e303ae91fa *man/doBoot.Rd
7131c5a5e80e0932a4fa2b47c8134166 *man/figures/logo.png
a419d577ef272ddb17fcb39531ffc0b4 *man/fishZ.Rd
fe6ed22db848f7784689453fc9551c4c *man/genInits.Rd
4b410905540c37c0a0dda1d795cdc69c *man/getRestrictionTerms.Rd
505f4530a7faa16782b41877feb45a39 *man/gr_full.Rd
27f8a2c181d2c108346b4bab969feed4 *man/hessian.Rd
10c066606fff2778162e912e81e3ca0a *man/ibd_phylo_otu.Rd
21f7c15db8e2bb90694537f4898e92be *man/ibd_phylo_sample.Rd
28f28cb0e36fba9c4f5eb4d00a6a6e8f *man/ibd_phylo_taxa.Rd
9806aa3c24649026f14f5da2e8d753a8 *man/invfishZ.Rd
ac35241d2ae20fe1f4179d22d5ded1e6 *man/invlogit.Rd
10889276bfdb43cbc3a8dbb61e6be2b7 *man/logit.Rd
43ba40029e7dc8610817da649a9ab6b4 *man/lrtest.Rd
c697dc694c6080d6b48d918ef421e575 *man/objfun.Rd
68989b05536f856703b7d7679a0b322d *man/otu_to_taxonomy.Rd
994c6944105022a1f6105e7d2be561be *man/pbLRT.Rd
10090c9ffc3999861b016dba1fe0d33c *man/pbRao.Rd
e217d9bd2f421ad069f5d26f58dfe838 *man/pbWald.Rd
7f36bfef193518d16718b536c8063a6f *man/pipe.Rd
b3f4182c2599f77303c8188fbd199ffb *man/plot.bbdml.Rd
4da7b60fa071817111b3b411ed3a116f *man/plot.differentialTest.Rd
3681f1d1690e3271464393b2de705815 *man/print.bbdml.Rd
674e18fe79745f5dcf27fccb9bd544cd *man/print.differentialTest.Rd
7d0110726258a1459e0dfe7f4b135475 *man/print.summary.bbdml.Rd
cc985b89ac1947b0f50b95f79ce75927 *man/qbetabinom.Rd
73319b2b10f98d8bac7d2e8f2447f00c *man/raotest.Rd
3a6ee872881905fe08e389f8811b22d5 *man/sandSE.Rd
ac0b4cd98f288f9fc1014b6d1f816f69 *man/sand_vcov.Rd
8073612429e75616d41cd71e1e4a9688 *man/score.Rd
f9489aa5e55c5e95b74802931b78e590 *man/simulate.bbdml.Rd
3e753c5bebdd8bba0c42956bc833f47f *man/soil_phylo_otu.Rd
c88eda4190c7ccd62a0f2a464902adfe *man/soil_phylo_sample.Rd
f95c2f855a0fdd35a66610b4806224af *man/soil_phylo_taxa.Rd
7cbc3c300999f47842921eff3ca2612f *man/soil_phylum_contrasts_otu.Rd
d79709e64ea1eccd90cbf932d1f4129a *man/soil_phylum_contrasts_sample.Rd
366b528fbfc9413127d84f6e63bd6edd *man/soil_phylum_small_otu.Rd
cd10b0d94be1f87b72e2ed8d77d9a0f2 *man/soil_phylum_small_otu1.Rd
2aed9181aa661c4cbbce98086164dd8a *man/soil_phylum_small_sample.Rd
c17b64091bc426aa75f0b0144db5d7b2 *man/summary.bbdml.Rd
cbf798ac5329cf6184a43a7f262b19be *man/waldchisq.Rd
1d6ee24af48e87af4b73c07eee04b394 *man/waldchisq_test.Rd
7c109fd4ed89cc96c9a8038f0254324e *man/waldt.Rd
2d3fb0f1ea5ca5103ddbccc01807d499 *man/warn_phyloseq.Rd
07cb4487b3ba80cdd0a418ce649d1ea4 *tests/testthat.R
7aeb6dab16d2d7625bfd66cd3d36dc7f *tests/testthat/test_bbdml.R
c1c6631299f3738100601d0082c69a45 *tests/testthat/test_contrastsTest.R
3b4ad3f22eb4bf47fc1db422bc987118 *tests/testthat/test_differentialTest.R
4d8b9fa9f50d2d23ae736fad50d70c01 *tests/testthat/test_genInits.R
fddefabfe1a2897e3b54d067f8084c61 *tests/testthat/test_getRestrictionTerms.R
4813122edf106bae67e18969c9a79a05 *tests/testthat/test_links.R
b0188ac22e938b072b0d7dfe32d93002 *tests/testthat/test_lrtest.R
d40c11d89f2a2c593d0e9c9a3edd6007 *tests/testthat/test_noninteger.R
573d8e85f69512bc8ba6395948e20198 *tests/testthat/test_objfun.R
9319830927a7c8eabe3b7d20a81e43c6 *tests/testthat/test_pb.R
878459650c5858e1936aa377bdef3256 *tests/testthat/test_qbetabinom.R
39b62aa4cfc27cfd2d701fa05e1e3813 *tests/testthat/test_raotest.R
5d024397ef40d61d114804258e202f47 *tests/testthat/test_s3.R
bc92b47d1fe727b51472d5365650b817 *tests/testthat/test_scorehessian.R
33df013ad0d7819e3162779c289c058f *tests/testthat/test_separation.R
645974adde92adb1b0e8e6dff9767028 *tests/testthat/test_simulate.R
822e8bd01b4886a7b5006b9d0c9748b7 *tests/testthat/test_std_errors.R
4c36f6da275b4fda17db5c6756eed3d3 *tests/testthat/test_testsRequiringPhyloseq.R
12f3691a542246312fdcd3a953676475 *tests/testthat/test_waldtest.R
f3052ccbd37c64ec62ac07c18bfc73d0 *vignettes/corncob-intro-no-phyloseq.Rmd
f9c13af0914969f3f23ae835d72e49bb *vignettes/corncob-intro.Rmd
