95f62fc9750f8dcc4fadadb9e04f5073 *DESCRIPTION
76b30ac69df3282da30f279a3df36805 *NAMESPACE
997eed0813f155a9c7578c11584da785 *R/coi5p.r
27a305de8f37ac7d835db7ba9c70cd25 *R/coil.r
542385a7e5efa8e06262f40292dbd936 *R/datasets.r
a8324601299f9281ac459d341f6fa56f *R/deploy_PHMMs.r
e983836baa43f75c45fcedb6e5737294 *R/pipeline.r
b6f83588777fde9e749838f1e343ec85 *R/print.r
12d9ba17d473800404a2c6e084094a32 *R/subset_PHMM.r
d692fe5673d27dcaa5c29194281da028 *R/sysdata.rda
d178e462d0b87ed51aa0463d5f7b07f6 *R/translation.r
1e4319a6225b63da5b27f9e72deb458f *README.md
950686a8f33934841dca029db675a8d8 *build/vignette.rds
ef3550853445be1090ee86feb2f85022 *data/example_barcode_data.RData
19833e60e0851360d44b7b83d6cde6f4 *inst/doc/coil-vignette.R
5ddd1427f81e0baddf0e682ddc983a4a *inst/doc/coil-vignette.Rmd
ed528e523af9acb2fb72bde01f5368e0 *inst/doc/coil-vignette.html
a622c4a8593ec2840d88a56525d4261b *inst/extdata/example_barcode_data.fasta
e9af4342a0756474d2ac530e837b61c3 *man/aa_coi_PHMM.Rd
44c68a77058b139fe0bb67732e77c7f5 *man/censored_translation.Rd
58783158ef39436aa3c4768211aec5f5 *man/coi5p.Rd
61aa1ba94f3973e08e15d345a2d3f7e5 *man/coi5p_pipe.Rd
7195353b5f729a035f7d1b5ba4583d00 *man/coil.Rd
9965843e3ddcdacdb9b84ab0ee9fdba5 *man/example_barcode_data.Rd
fb4df1a7e73323d78b32bcd15291af48 *man/example_nt_string.Rd
1cfbee564410f7bc57d7457a5d2adfed *man/flatten_coi5p.Rd
92ec2db7f0d76f8d01c506fdf4faffac *man/frame.Rd
214bdfd682cc1e6e1c4a07fab074a360 *man/indel_check.Rd
c9c2781a5d9d239226acb922252a4f5e *man/individual_AAbin.Rd
b4ea779aec7cd04dbba7aeda9502ae32 *man/individual_DNAbin.Rd
937a0d87f5734126d91b36c294279e3d *man/ins_front_trim.Rd
18571c919d448ed9e88f0a8e4bfca544 *man/leading_ins.Rd
8721b881cb00b24e9c50ec14cfe8922d *man/new_coi5p.Rd
fd6ba28d018a32caf543a347156dc93a *man/nt_coi_PHMM.Rd
55c87b17b3365e53cc3b72a0a393f693 *man/print.coi5p.Rd
6c00fbe9570877ab195cc6e05ff2375d *man/set_frame.Rd
b31e94dc95231e46dd9dd5aac13928a4 *man/subsetPHMM.Rd
fc50fc487af6a70cedded17ee193c9f5 *man/trans_df.Rd
bf51e2018b6df1ce6a41570803fec219 *man/translate.Rd
046351fd9b36aee1b1dfb7cf795c183b *man/translate_codon.Rd
7aaab25d6d245e64ed3532e3ba816d19 *man/validate_coi5p.Rd
85ad32ca0ddec804c38f32cbbe2182ae *man/which_trans_table.Rd
99c22256a10370e38bf9dc09d67f8403 *tests/testthat.R
19b12aff4c8d872b8c53e58bfaad01af *tests/testthat/test_badCalls.r
6383b6c3fadf2a05a34a2bfa306b2f1e *tests/testthat/test_delSeq.r
a2b94dbebaeb0ffa1048804247b6bff1 *tests/testthat/test_frameNotes.r
dc4fd53e8c1b46fd99dbe5beea0eeeec *tests/testthat/test_goodSeq.r
aec472df95c6036988c344402a49e7df *tests/testthat/test_inSeq.r
b2e317c546cfbae0338c3bd7e76ba78f *tests/testthat/test_longSeq.r
d893e5c348b6b3c24b38f2f069526b57 *tests/testthat/test_print.r
f98003278df8d31175fab35a14baae96 *tests/testthat/test_shortSeq.r
cd0bf7eca379ef7f0590c449edec01fb *tests/testthat/test_sparseSeq.r
38a0e014f4e3d1f750813dee168498bb *tests/testthat/test_subsetPHMM.r
8e906ff40f6a96552068097af0099d89 *tests/testthat/test_translate.r
1f44b3a5fb43263d4e6d8fe51b14e9c3 *tests/testthat/test_workflow.r
5ddd1427f81e0baddf0e682ddc983a4a *vignettes/coil-vignette.Rmd
