000e690f8f249b0563fcd80fecb5998f *DESCRIPTION
76b30ac69df3282da30f279a3df36805 *NAMESPACE
5b1f4234b9a9b9712e9d79816b654a0d *R/coi5p.r
676dad23c245b505307877c681af0c89 *R/coil.r
7243e787e18b9a2543ea019d98ce3491 *R/datasets.r
56b06950ffca04d053fdb42a1d261580 *R/deploy_PHMMs.r
14c71a95cb8fcdadf1a4b9d0f8929335 *R/pipeline.r
cce4903aaa28e67994d8450984887133 *R/print.r
4b564c8ecc74574d509f370ce1752437 *R/sysdata.rda
8cb5aa933e72f3d929cfa49ebcbc0a1d *R/translation.r
88353174cacd2137d56579797ec72e7e *README.md
ed4c43b63ab2213be77c69b191030958 *build/vignette.rds
ef3550853445be1090ee86feb2f85022 *data/example_barcode_data.RData
c01f98518eaa79a07f5b615c8ac2be43 *inst/doc/coil-vignette.R
41a691f89cd2bdd666e79ae74e1bcefc *inst/doc/coil-vignette.Rmd
6832ebd224b2fa07103041d428939b38 *inst/doc/coil-vignette.html
a622c4a8593ec2840d88a56525d4261b *inst/extdata/example_barcode_data.fasta
03fa7c0bf62dde384f6100decd9df91d *man/aa_PHMM.Rd
2a01917b44322343137ab6053ae2265b *man/censored_translation.Rd
648731740da8c697d6ae76ff0edad32d *man/coi5p.Rd
661ffd5f8f2f30c20098d53cdf2466db *man/coi5p_pipe.Rd
03c9745214b1ba07b1566e6ceed92e37 *man/coil.Rd
ff49909b73426d2fbdc6f07a9d12b1d3 *man/example_barcode_data.Rd
0aa14be255d2ee64d9c5ee1470e5beaf *man/example_nt_string.Rd
1cfbee564410f7bc57d7457a5d2adfed *man/flatten_coi5p.Rd
77f7c8eed857682cfd8d591249c5f2b9 *man/frame.Rd
559598b2cc6f9d48e5af1a2486187ccd *man/indel_check.Rd
c9c2781a5d9d239226acb922252a4f5e *man/individual_AAbin.Rd
b4ea779aec7cd04dbba7aeda9502ae32 *man/individual_DNAbin.Rd
937a0d87f5734126d91b36c294279e3d *man/ins_front_trim.Rd
18571c919d448ed9e88f0a8e4bfca544 *man/leading_ins.Rd
8721b881cb00b24e9c50ec14cfe8922d *man/new_coi5p.Rd
aed6cccd678247c3ce71394d0b6bbd3c *man/nt_PHMM.Rd
55c87b17b3365e53cc3b72a0a393f693 *man/print.coi5p.Rd
6c00fbe9570877ab195cc6e05ff2375d *man/set_frame.Rd
1345b81a618cf1fc60db28ee89deb5a7 *man/trans_df.Rd
b381d8d60a2b33199dcc714eb9df7008 *man/translate.Rd
046351fd9b36aee1b1dfb7cf795c183b *man/translate_codon.Rd
7aaab25d6d245e64ed3532e3ba816d19 *man/validate_coi5p.Rd
d169104c6c5a81bbd0508ded85c5b44e *man/which_trans_table.Rd
99c22256a10370e38bf9dc09d67f8403 *tests/testthat.R
19b12aff4c8d872b8c53e58bfaad01af *tests/testthat/test_badCalls.r
6383b6c3fadf2a05a34a2bfa306b2f1e *tests/testthat/test_delSeq.r
1fdcad8d0323afc93baf5f93b530fc9a *tests/testthat/test_goodSeq.r
aec472df95c6036988c344402a49e7df *tests/testthat/test_inSeq.r
dbfd70768a3dd8126ae5dc80044bac9f *tests/testthat/test_longSeq.r
7dcafa9fa3ddcbe6767bc6b014ccf224 *tests/testthat/test_print.r
f98003278df8d31175fab35a14baae96 *tests/testthat/test_shortSeq.r
cd0bf7eca379ef7f0590c449edec01fb *tests/testthat/test_sparseSeq.r
4a33e69c6600251e2e97d8afcb307d27 *tests/testthat/test_translate.r
dbc04f4231467c2e0ec5e708dc4d4d08 *tests/testthat/test_workflow.r
41a691f89cd2bdd666e79ae74e1bcefc *vignettes/coil-vignette.Rmd
