564101ceafcbe77f3f6c07e92a8c75a6 *DESCRIPTION
bd9290cfd0901c58ed8165117de347bc *NAMESPACE
a65ec4d3fda564ceb0c92dfe6baedb74 *R/RcppExports.R
98ef2f1661dcab366a0fb404070e507e *R/Viterbi.R
5290888617fadf57e3ab6c20bf4e1f75 *R/align.R
7352a4a8b58e25b71e5252529ef3bde1 *R/aphid.R
86dae797c525c4a1d57f8701ee2a100f *R/backward.R
017b6e75fc134bda21803568a80c8c90 *R/data.R
c04f3c401a25dc2b29bc9cade17b740b *R/deriveHMM.R
258439705f8892c2cdd5af12ef606be5 *R/derivePHMM.R
3e8d25270c673ef2fb04fc834498f5d2 *R/forward.R
26c4634c7108f9fea8953ef169041e15 *R/generate.R
1afddae9d2947a74a8b831ecffd5d175 *R/plot.R
c73372c6bccf9abbfe6b1eb2539c530d *R/posterior.R
aa57079b4f0551331fcf27f0228a9111 *R/print.R
e4ac346f3fbc1d423b70517a80ba7772 *R/read.R
564313ffb7a3938ccc2d10dc6993ff15 *R/train.R
69fd6200c5a68db3f457966b7e9dd3e0 *R/utils.R
7380c4fce88d31b4e9412ba7fb5e416e *R/weight.R
fcbf01afccec4fee07809ad535da1c0b *R/write.R
096886776c95666ce9d624aef848c7f1 *README.md
39ad264047326c8aca0ebba875589cc2 *build/vignette.rds
2cec5e355bd0f72eb17885d6f7c531f9 *data/casino.RData
5591c4ffe2abef1e50d907b8100b7731 *data/globins.RData
6d7df45f3d14ed8fbf40808b19071350 *data/substitution.RData
61f020cb66e800de4432471972c84f65 *inst/CITATION
075369a018ed73256d9f9b55865b2036 *inst/doc/aphid-vignette.R
c4a432af14537842b28b05d1ff083970 *inst/doc/aphid-vignette.Rmd
c4b4b2f4b98543c3425e0adf28280ade *inst/doc/aphid-vignette.html
392f3950a4512f2a31c877f5673be3d1 *man/Viterbi.Rd
4e2d63cbd5665cc9c79e02594023e3ec *man/align.Rd
981813fa1469ecf924d5ec11dd4da3df *man/aphid.Rd
a0afd1368edbbdf8e3894a167a5fa337 *man/backward.Rd
dee2879923ae5c4a1eaef550250fefca *man/casino.Rd
4b4fc09599d8c9ee8435eea62d5e219d *man/deriveHMM.Rd
a0eefc3bc33c70de40a1447ac9a69ae2 *man/derivePHMM.Rd
b991f365af12d3e120747a9ae901fbff *man/forward.Rd
9a4576f64138c7720d2ace55a462863d *man/generate.Rd
eea7b6d86ca7b2c4c1dac830a3809e5c *man/globins.Rd
f9679e0e28d1c109071da90f7f7bbb9a *man/logsum.Rd
bec686d120c6da4a5781b8b9a6347c2d *man/map.Rd
48c4cf61dd66f9a5dbdd848d7a8e29cd *man/plot.HMM.Rd
d4269a84a42ab8ca60f5c25d09783538 *man/plot.PHMM.Rd
ae627a12fb714885ba583fb3502bbe33 *man/posterior.Rd
f63481d41e9a23f95009252922ae3aeb *man/print.Rd
b5673bbca574ec38c5cc68e44bca3b1e *man/readPHMM.Rd
e1d38c8df38da138f0ad17d7a6899471 *man/substitution.Rd
f0d0f8e958e6b663b3ebeb12455a28fc *man/train.Rd
c411797a99fc16b6475c30f20540bd3c *man/unalign.Rd
d2d6dfc19e2bdc3e52db4065d0d1ba43 *man/weight.Rd
3d9066085de87f631b13f6b142859d1d *man/writePHMM.Rd
52561ed26ae347a8e6fe51082d35e738 *src/Makevars
98bfba48f4cf6976e3a1a3b25e7f6d4f *src/RcppExports.cpp
4ae89f800fecac313175228ec1a0c7d7 *src/ViterbiC.cpp
bc9f7ac0061ca90a2d5079a9af659811 *src/init.cpp
52e6f9ddd6cc38d74b9070faf6671cf4 *src/map.cpp
d4dd8f49d66b42529a3f54a467269a1c *src/utils.cpp
3b6e844aed784b2217f9fc8b120a64dd *tests/testthat.R
c7c58079606ef9b1e02c8d2cea8043a6 *tests/testthat/test_HMM.R
518ffa84e6cc033ab125ff896c9ba871 *tests/testthat/test_PHMM.R
c4a432af14537842b28b05d1ff083970 *vignettes/aphid-vignette.Rmd
e1a83c18859052a58c0475ff0facaf80 *vignettes/aphid.bib
