267eade94176176b4783a14e5f17930c *DESCRIPTION
db97f398e901bbbf2e78f8b5876f9366 *NAMESPACE
963c65ecb203217b9f9209bf42c485be *NEWS.md
c1406b01774cdfd87fa3bc7500109560 *R/RcppExports.R
2e0b30d60690e7f3042e182406a4db84 *R/adjclust.R
b08f9ae47e673049a61d5b0b1c3edc0d *R/buildHeap.R
3637764ad5eefdb7d707f8d94d9b9d10 *R/chac.R
5ef38633eadc2a7bdc7fe968c1e496fe *R/helpers.R
9d2633d135634142620db47f711cd93f *R/hicClust.R
1951cb2f1f839e6e5fac3162ae4c68f2 *R/plotSim.R
2773d349033325cd7b856ea440eca513 *R/snpClust.R
6332ae8e9110394ee062d318e44ce15e *README.md
7f2094c7b4d5faa522b624cffc621f8b *build/partial.rdb
5551ecdbc7ee248c678d33c8b0421519 *build/vignette.rds
ff2e48089e4adf9aa4458e5f4e47e82b *inst/CITATION
b15293fdc09019ddcc89aada210896cf *inst/WORDLIST
b253ab7270e1b2645f6aef99f9f096d4 *inst/doc/hicClust.R
a053f2db6cc09f6e532cb836ec4b1c07 *inst/doc/hicClust.Rmd
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7341d2906511fc6825b4d33b7a695329 *inst/doc/notesCHAC.R
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36938884fab89261f065da8ba73df071 *inst/doc/snpClust.Rmd
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dd6726c6c4b30f3cea804183395128eb *inst/extdata/hic_imr90_40_XX.rda
1e8659d605ac23dbd53c9b00d95bbb52 *inst/extdata/res_adjclust_0.3.0.rds
bd492a22b4201740430f97be6b6c45fe *inst/extdata/sample.txt
abe469addd68c05b93241b7ddf51ab7f *inst/system/createExampleLDData.R
8a7f67643f909f889d8f2efcf825ca00 *inst/system/create_hic_chrXchrX.R
ab247bcc85e5b115f6bb89fbde548770 *inst/system/create_prevfit.R
7820ce2626dd21192af80ce5eccfbf20 *man/adjClust.Rd
58012d3169795ee067fb4a7646229653 *man/chac.Rd
1294bb778aa771cb8b0432d7ed4aef66 *man/figures/README-adjClust-1.png
04bd23cf641802638345dc446a6a6e26 *man/figures/README-hicClust-1.png
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3ed8e614783e5901a9881615936d3d0b *man/hicClust.Rd
05217c9de802f182c8a89457d5053aa6 *man/plotSim.Rd
e967085f905ea77ae4dab33aa876939d *man/select.Rd
6fcb32929007b8720337975ff0045f83 *man/snpClust.Rd
b97fbab365040d67977c8459b09643ce *src/Makevars
0d6094e7affe65a018eab49c308e0dc0 *src/Makevars.win
c34dc7fde8668f2541d1289a27157b33 *src/RcppExports.cpp
21caadc1a0b95df31285a2fb448554e5 *src/adjClustFast.cpp
6d5fc09b353b9419b5a16dd7bec849ef *src/mainFunctions.c
4543c7812c549c8a643d02ecafc49922 *tests/testthat.R
16e5b8fa0c6012c902c5679d4c210250 *tests/testthat/test_adjClust.R
267df9e41ee0444d92e65851948fc181 *tests/testthat/test_adjclust_equivalentTo_hclust.R
8d35f7345b10dffa75efc22944568900 *tests/testthat/test_adjclust_equivalentTo_rioja.R
67818db6ab375f3391724abe6d2e5d75 *tests/testthat/test_ascendingCompatibility.R
7d9eeffd4e4c4eaac0e1b170ec932443 *tests/testthat/test_chac.R
01b537b59c9f3e247d98bc015034d726 *tests/testthat/test_correct.R
c16eba8a6c623694369a4274a5d2d59f *tests/testthat/test_corrected_plot.R
1b7a6627a21b1418282012efd7e6feb0 *tests/testthat/test_cuttree.R
84950b344add1399a1e8f36b75435120 *tests/testthat/test_dense_sparse_comparison.R
0d14b44341bf3837c2ca3f14d7b0e041 *tests/testthat/test_final_height.R
1e0bd50a9cc089921aaa6bac731bae78 *tests/testthat/test_hicClust.R
35236e768b4459582312d941de486f19 *tests/testthat/test_modify.R
99c39ed3717e8ff96e74a71e9ccfae0a *tests/testthat/test_plotSim.R
169a36c49655cf17955ae0588132cc9c *tests/testthat/test_similarity_equivalentTo_dissimilarity.R
6c1846989cbad1f4f1279efbbae5ffa2 *tests/testthat/test_snpClust.R
905ff4a7ae593742aa20e6585a53c8b5 *tests/testthat/test_snpClust_NA-in-LD.R
cf2a1f60dc03a740eaf1574142296183 *tests/testthat/test_warning_with_decreasing_height_plots.R
a053f2db6cc09f6e532cb836ec4b1c07 *vignettes/hicClust.Rmd
9fcc7d21a200d49aa4a705c0416d8f63 *vignettes/notesCHAC.Rmd
36938884fab89261f065da8ba73df071 *vignettes/snpClust.Rmd
