241359418f07f0dae9e55764b82f7e7a *DESCRIPTION
bdd1367f68b4d4261ebf334c2245e35a *NAMESPACE
8ec4782343c6dc347090b88e9e4f8f8f *NEWS
e43cf628ec60a9fbb86e087174b4b694 *R/BF_Rao_Blackwell.R
404870f1f206e5ccacc99086148eb0f9 *R/BF_auxiliary.R
f8747c405b2e8c8acec04c9d84692a40 *R/BF_likelihoods.R
443247ce1e34466c22a75fe1bb110418 *R/BF_marginalMPT.R
4c15f34048ca3db9279674e933476034 *R/BFslope.R
80b9737096751109ee49674a535ef992 *R/CollectionOfInputProcessingFunctions.R
6531751f7b5024884b656acdaa45b15c *R/PPP.R
fdaadc62fb38af438b4015282adc0025 *R/RcppExports.R
e4fdbad8101cbda0c537a707a92395ee *R/T1perGroup.R
9f8ad213e274be3248473a824a3bef0c *R/TreeBUGS-package.R
1fae833bd00f37f0dc552e28122f5cc2 *R/arnold2013.R
b73e70b6f97c10833a12d2ca35fb936b *R/betweenSubjects.R
936328a9e8595a84eca84fdff4cee60d *R/callingSampler.R
d0695b50429b04aff96363ee4111b9c7 *R/checkFunctions.R
a8af8a27083930b4bba6b15e08dd01e9 *R/corSamples.R
3a42c58db23f905d20077883ab7deb47 *R/correlationBayes.R
8802c9e3566844923804d6d73dc0f736 *R/correlationBayesMCMC.R
e567b74107c362b0cd9c8043fb267335 *R/covCorrelationString.R
346cffd4bd1f75e7353660513d868eeb *R/covDataRead.R
13de4c675f54042227fde73113a12f95 *R/covFactor.R
545320dfae9be9242f99f0f137f4e068 *R/covPredictorHandling.R
278f5d12d4cc615ec982957f610610a4 *R/covariateHandling.R
d1835db92eeb4dc175a3509824f2961c *R/extendMPT.R
96c923a223db352d39819baeec4d4ffb *R/fitBetaMPT.R
51e1ef64c38f9ca0059aaf9a8c7ba6a6 *R/fitBetaMPTcpp.R
e2b3326abf5d9063b84b432e52e53cb2 *R/fitModel.R
03d8b86c6e5ad153c1f3b1a5e4edadcb *R/fitModelCpp.R
a7c661d1a277787f103502fa88e4cbd2 *R/fitSimpleMPT.R
e21e1e0b8c6148b1da649abba95b9339 *R/fitTraitMPT.R
0345bdc6de00995abac7472b63a825da *R/genDataBeta.R
81f70ae96e30c56ba0f86d9369aa4a9d *R/genDataCheck.R
9054a1fb579566a8b0a84a210d11d1ba *R/genDataMPT.R
b4b0e3ace83efb1d1e09f9b8fba91172 *R/genDataTrait.R
dc96fd5e035a8e38d3ae407c41419544 *R/getGroupMeans.R
4e5a2eefcff797995978f9e1d6047702 *R/getParam.R
0b0596b3c2d847730bb55ce27b029378 *R/getSamples.R
e899dddba20e383705c66c608ae59026 *R/makeModelDescription.R
3d3646fb068399795abd9370b47d9d02 *R/parseEQN.R
0104afc3766ed147f0cec0a0d7bbacd6 *R/parseRestrictions.R
9e92d5d1fda5e2313b59e56ad1fa0638 *R/plotConvergence.R
29a40a36bf13b9c5140df5e957d71d88 *R/plotDistribution.R
aaa62ccc352a125bbbd1c4677d6c614e *R/plotFit.R
424f64f75e46c25ecae748b4f544ceb9 *R/plotFrequencies.R
cacb687ab095dcdddd5be501aa890eff *R/plotParameters.R
a6032ba29b1f07076da5827faa6aa9f7 *R/plotPrior.R
97e62704355d0f14c62849630398cc96 *R/plotPriorPost.R
cbf387f20259c11cf80be41205915bac *R/posteriorPredictive.R
7ed9c00f7b9df98bc398a1b06ab44537 *R/printMPT.R
e09e0dfcbb4be1d5be3b1e07990eb654 *R/priorPredictive.R
8a95495fefbe1cc83523b63ae16238ab *R/probitInverse.R
cb5b9f1ef6d750987b5e3e5c3c323707 *R/readEQN.R
2e02684f789171c8c08c10dd84ec6cb3 *R/renameBUGSoutput.R
65681d40393bdbeafad2c106cf5009cc *R/sampleHyperprior.R
5efa36ea86029034ba0fc0f321569bd3 *R/summarizeMCMC.R
881918ba2f46a876c5699184eaea6e38 *R/summarizeMPT.R
437a53a16f06ec071c86d8fd69e55e30 *R/testHetChi.R
841b475ec9ed40dff8a9dce02703752b *R/testHetPerm.R
6316d30d5b102da353919b6b3f8c5d8f *R/thetaHandling.R
c36fe5e13200b39d8fcf06759e0743be *R/transformedParModelfile.R
134376a2364f6ca383173d50a7e86b2a *R/transformedParPosthoc.R
9c2412bf827834640f538071ad44e7e6 *R/within_subject_EQN.R
502d78165c5bd5eb54af1a5bfdaf7cc3 *R/writeSummaryToFile.R
c418afac55d1fda9b0744812b8f4a7f8 *build/vignette.rds
71355a4f936ee6d3f69e673fa73d4237 *data/arnold2013.RData
4c68affe14ef007de315744960951444 *inst/CITATION
05e74db71d7fafbaacb957b1daa34dba *inst/MPTmodels/2htm.eqn
d9a6bed11ce4e4545fd0001882d8b950 *inst/MPTmodels/2htsm.eqn
c68dc54b1cbda575c4d8288f1bcabca8 *inst/MPTmodels/winbugs_zero_trick.jags
797103cbbda897f9525caffeb124cb90 *inst/doc/TreeBUGS_1_intro.R
de87a4956855961f3621624905f51519 *inst/doc/TreeBUGS_1_intro.Rmd
f0ebbf7a2c8b1c4df14ea23cc81fd1e6 *inst/doc/TreeBUGS_1_intro.html
c6f53635c6e3eb23c9980e5a0343a234 *inst/doc/TreeBUGS_2_extended.R
d88d1957d42521bf627c83f484b1a450 *inst/doc/TreeBUGS_2_extended.Rmd
e50c76c403c1f1b75bc460b8f60048eb *inst/doc/TreeBUGS_2_extended.html
95eb385160919eb8f9d52ed3578ca24e *man/BayesFactorMPT.Rd
cc9dc837539ee0d44dcce7709cd3bfd2 *man/BayesFactorSlope.Rd
d63efc0c227d5788d5ff562cecddaebd *man/PPP.Rd
d98d369edb44321371fda9060b204ad4 *man/TreeBUGS-package.Rd
e501f063e273210aef3780075699c3c1 *man/arnold2013.Rd
9037c037c5b0502a78cc5cb0b1cf9664 *man/betaMPT.Rd
b988d219508bb5bd04f0c9417092fbd2 *man/betaMPTcpp.Rd
22fb8c5d3eb20c5329d2f527da47534d *man/betweenSubjectMPT.Rd
530e98dc7bb2891cc0d55b39abc3621d *man/correlationPosterior.Rd
65a5b1866392aa973c3c1957bb9d750c *man/extendMPT.Rd
623e441d03e7537a61eb6f5efe87ec8a *man/genBetaMPT.Rd
62b57b70a58669357649b20b089a01b0 *man/genMPT.Rd
9bb089dd152c9d7838a709a6adbacbf2 *man/genTraitMPT.Rd
cf9b51403fb3eb4672c88ba093a81715 *man/getGroupMeans.Rd
0498a4b1fdce3f10a853d7629614e9cd *man/getParam.Rd
25ddbb953149aef04eb8a2f4abb9f6f7 *man/getSamples.Rd
d9362cf3a3d053ce9767cdbad011577c *man/marginalMPT.Rd
7785301b03d0cbe27d40d11d6d4890c6 *man/plot.Rd
45d71ad13a638801cf929a8436906f1f *man/plotDistribution.Rd
9a3096d7523b1b3dcddb9626d9e38d1b *man/plotFit.Rd
127c01ec8d35e455a7f0f36f7c7595ee *man/plotFreq.Rd
845b38228f23a56069e9b1835b997687 *man/plotParam.Rd
6474cf3ee20b6a511895ed1da1896019 *man/plotPrior.Rd
3ad7d2cd89c9ba1c91f05db33758e33c *man/plotPriorPost.Rd
4be192fd14fb6c424d6a84a89c4eb992 *man/posteriorPredictive.Rd
8237437e7f39fb22440c6c10a58a057a *man/priorPredictive.Rd
da3f6bc411873ed15f4082aa5df2832c *man/probitInverse.Rd
23cb0c0b8f12287a3dee8d44d4e87489 *man/readEQN.Rd
1ae8c8c968ebec00fb11e31a11e12d30 *man/simpleMPT.Rd
a318a2129a7c8bcde41168063ceb718c *man/summarizeMCMC.Rd
4ead76f88196fe795e113111a3e4455e *man/summarizeMPT.Rd
cf90d63c3a0d317b292c0a877d276e6e *man/testHetChi.Rd
19227d2da03f42b67a33811fd8a986b1 *man/testHetPerm.Rd
cf7a00b07f8a2d1de612c24c108ee353 *man/traitMPT.Rd
04562a9babdaa7704d8da92aac1e0b32 *man/transformedParameters.Rd
7c60d26e5a977740228edadf86a685af *man/withinSubjectEQN.Rd
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
a2b199c76f7506ba6f711de5494bb286 *src/RcppExports.cpp
37711264952b645e74638fa67dbe13ce *src/betaMPT.cpp
8ff61250f76509012563dac0083e59b4 *src/init.c
a34ce7c6b1a02949b611b62fceeca759 *src/loglikMPT.cpp
3cd4ae2b745a244c81a09946f6d340fe *tests/testthat.R
03d4607c59a68726271ebfe1905b5dbb *tests/testthat/test_genMPT.R
e30f460b6ca9ba84b1e47013b34ca259 *tests/testthat/test_readEQN.R
de87a4956855961f3621624905f51519 *vignettes/TreeBUGS_1_intro.Rmd
d88d1957d42521bf627c83f484b1a450 *vignettes/TreeBUGS_2_extended.Rmd
