cfbe155f19a91a42f9d44318184519e1 *DESCRIPTION
55ddaf1c4c216684116134cfb9393a9d *NAMESPACE
536bbea0aff549204f3f2f35f162601e *NEWS
e371b47571466583c9c10e91c15653a3 *R/CollectionOfInputProcessingFunctions.R
3ae805b9a2827d34c2bfda30c760d46b *R/PPP.R
21b6b609afe704d079e7cf84bf85bf30 *R/RcppExports.R
e4fdbad8101cbda0c537a707a92395ee *R/T1perGroup.R
9fc5be08e669f9fd55d65c6a2373deb3 *R/TreeBUGS-package.R
1fae833bd00f37f0dc552e28122f5cc2 *R/arnold2013.R
6ce9e6002a89a7c18efaa601a69efa0d *R/betweenSubjects.R
dccbd2a76edda65713c9d99e513de8c2 *R/callingSampler.R
be1058fbcc126500bed01f65e5b6f3db *R/checkFunctions.R
a8af8a27083930b4bba6b15e08dd01e9 *R/corSamples.R
3e50c94a088629997a40191e1e8af310 *R/correlationBayes.R
b1ea4729c86abbbd941244c3ae3c5fd3 *R/correlationBayesMCMC.R
e567b74107c362b0cd9c8043fb267335 *R/covCorrelationString.R
346cffd4bd1f75e7353660513d868eeb *R/covDataRead.R
13de4c675f54042227fde73113a12f95 *R/covFactor.R
025b0f21335e9c37684b05d20442347e *R/covPredictorHandling.R
278f5d12d4cc615ec982957f610610a4 *R/covariateHandling.R
4791a7603cc3c29e62dc5508060d09ba *R/extendMPT.R
c48c19ef466a140a6ff769a32a3cd82e *R/fitBetaMPT.R
29c95394b0875794bcdc63b3dc61ac7f *R/fitBetaMPTcpp.R
aae14baa79d1c3a79cf3518f1a9cc294 *R/fitModel.R
cc9bd38756fb6bb52b96eafbdd840d4a *R/fitModelCpp.R
6489f65536c34e515eeda890df6683a7 *R/fitSimpleMPT.R
a5c4615296a6e16123caed10d3a7b998 *R/fitTraitMPT.R
0090fd4f7e75ae262ec347d886a87e03 *R/genDataBeta.R
b7e7fdc8dd9b7d9f4356c6cff5a8f451 *R/genDataCheck.R
594e5a462f8c5ccf43495ce5b9ad5e51 *R/genDataMPT.R
34125d6cfa31d9f9cfb07aaedc6ccbd6 *R/genDataTrait.R
c6b9f952fafa323ceee7e9fdbe2073bd *R/getGroupMeans.R
6949f17c38b9de68671a85a1ad49f532 *R/getParam.R
12d4fcb42e61be87e2f78a3c7c92c894 *R/makeModelDescription.R
04b4ca8a301d5829072587c1fbbd3efa *R/parseEQN.R
0104afc3766ed147f0cec0a0d7bbacd6 *R/parseRestrictions.R
67536165808b5e49d9937cdbdc445485 *R/plotConvergence.R
111ef21fd62f5660cfb37517a4a5686f *R/plotDistribution.R
e84199f3e6e188f9d9da20d43c62e50e *R/plotFit.R
5acd556a3ddf9611bc41f6967407259a *R/plotFrequencies.R
41f0eb284ea8732318a5319d0871dd78 *R/plotParameters.R
198a2999c25591419ca1e387e2fb34a4 *R/plotPrior.R
a5ea1a25f28996e0a001dc315f8b6368 *R/plotPriorPost.R
cbf387f20259c11cf80be41205915bac *R/posteriorPredictive.R
f35d3978135c5fec66751949e02037c1 *R/printMPT.R
6492e8a1fb11cfdaf40dcf599cdfc9b5 *R/priorPredictive.R
8a95495fefbe1cc83523b63ae16238ab *R/probitInverse.R
f593d905975f261be300b536a39d3e81 *R/readEQN.R
2e02684f789171c8c08c10dd84ec6cb3 *R/renameBUGSoutput.R
39b549868f47472b1dc094bce87501f6 *R/sampleHyperprior.R
57abc779b22af2e67f1df86a2e002cc2 *R/summarizeMCMC.R
8357ba103ffe83676905ea1a5aea2abf *R/summarizeMPT.R
437a53a16f06ec071c86d8fd69e55e30 *R/testHetChi.R
841b475ec9ed40dff8a9dce02703752b *R/testHetPerm.R
6316d30d5b102da353919b6b3f8c5d8f *R/thetaHandling.R
e1bd196f530c9eb540062a4312a3b6db *R/transformedParModelfile.R
bfb885b27618e2b2042de4e9a1d23956 *R/transformedParPosthoc.R
9c2412bf827834640f538071ad44e7e6 *R/within_subject_EQN.R
502d78165c5bd5eb54af1a5bfdaf7cc3 *R/writeSummaryToFile.R
345683d966e267f715e2299dd6cb4960 *build/vignette.rds
71355a4f936ee6d3f69e673fa73d4237 *data/arnold2013.RData
53550f920ed25e1ae76ee61098886294 *inst/CITATION
05e74db71d7fafbaacb957b1daa34dba *inst/MPTmodels/2htm.eqn
d9a6bed11ce4e4545fd0001882d8b950 *inst/MPTmodels/2htsm.eqn
c68dc54b1cbda575c4d8288f1bcabca8 *inst/MPTmodels/winbugs_zero_trick.jags
797103cbbda897f9525caffeb124cb90 *inst/doc/TreeBUGS_1_intro.R
de87a4956855961f3621624905f51519 *inst/doc/TreeBUGS_1_intro.Rmd
945e0d4110b963d998366e0651024ab3 *inst/doc/TreeBUGS_1_intro.html
c6f53635c6e3eb23c9980e5a0343a234 *inst/doc/TreeBUGS_2_extended.R
e39f1a4c9d9c25ce90f483f2253b50a5 *inst/doc/TreeBUGS_2_extended.Rmd
286d7fde58176d56dfe9348e69075aa5 *inst/doc/TreeBUGS_2_extended.html
10d585a1abfc783e882abefe6ba8e99a *man/PPP.Rd
547e31053e82e640fd4ff6c68340717a *man/TreeBUGS.Rd
dc4c4fb298ff2c2bc95a8b0020396690 *man/arnold2013.Rd
844cc342a355fc1372ac9dd70b54a1d7 *man/betaMPT.Rd
313aabf74b0404538c87d5c0975afc55 *man/betaMPTcpp.Rd
15ea3a0deca45718882810676d0ee32e *man/betweenSubjectMPT.Rd
608c1b21524ba0d02047bef38281933b *man/correlationPosterior.Rd
18218d15b382653af9bd24491b6d8518 *man/extendMPT.Rd
4d30d92e4446f0d6f333d586a9ae22f0 *man/genBetaMPT.Rd
7eaf3671240fc91356acfdc1ffb11e65 *man/genMPT.Rd
6b0497fcb1fbf5761686c9afbee2b37b *man/genTraitMPT.Rd
d2332c80706738bef1acd597138837cf *man/getGroupMeans.Rd
c70d1b908cc65b9360c33ad0810e5b2d *man/getParam.Rd
67670464d730725f2b2fe89b89beb907 *man/plot.Rd
3de116ae893d58fb852b51346f0b32b3 *man/plotDistribution.Rd
08b33a5815b223832a12c786c1461217 *man/plotFit.Rd
40298d812945ce51464e43d65f4aadf9 *man/plotFreq.Rd
2bc9626823fd53581c33ae3ed6dc5121 *man/plotParam.Rd
83bcafd048c0f7cb3bf3f3d4251a6151 *man/plotPrior.Rd
f7a946c4f97c5eb68d64a23c8c55a45f *man/plotPriorPost.Rd
d04b129bb4b92edc9a1bdc0a833cd626 *man/posteriorPredictive.Rd
bdfb8bc46db35c4239161e0f9ff6f373 *man/priorPredictive.Rd
b10841fee19776479b78a9bdfb03c4b8 *man/probitInverse.Rd
2ff2f0b2ae84711b22433fed4eee3b8d *man/readEQN.Rd
0d9b76013f8bbdc5baeae1963e3e4225 *man/simpleMPT.Rd
222a51a523d793203a589fd5f25c4bf0 *man/summarizeMCMC.Rd
7ac8f5335b3ddbd10be87b127d556dbb *man/summarizeMPT.Rd
b20bf38cb497dff11704c8e27d948008 *man/testHetChi.Rd
7d5603f4a47da8ac3f41e95b3f039cc2 *man/testHetPerm.Rd
c22e8d9b3cbf50f27d6d6538b71f9a92 *man/traitMPT.Rd
d8e01e0c39d00d16aae725233373d05f *man/transformedParameters.Rd
670826150dc5b5246f4659f0b9a4a0fc *man/withinSubjectEQN.Rd
2a6f9e9e044a78154d3cfda5936d6f48 *src/Makevars
8d46d69896a1f1d31ed76035a0e49d67 *src/Makevars.win
60e9f220354e0ef8403715ac2dee998a *src/RcppExports.cpp
4fb33184f6954e454dd2439d1fe9fd3f *src/betaMPT.cpp
3cd4ae2b745a244c81a09946f6d340fe *tests/testthat.R
03d4607c59a68726271ebfe1905b5dbb *tests/testthat/test_genMPT.R
e30f460b6ca9ba84b1e47013b34ca259 *tests/testthat/test_readEQN.R
de87a4956855961f3621624905f51519 *vignettes/TreeBUGS_1_intro.Rmd
e39f1a4c9d9c25ce90f483f2253b50a5 *vignettes/TreeBUGS_2_extended.Rmd
