446fc23e699ed6c72a5f7f0a3d840b5b *DESCRIPTION
f1f6ba54e2d6d3f08524ca2bbd299d45 *NAMESPACE
a7434b6d3688c2e2f7d0bb17c756b2c1 *NEWS.md
383f4932e486f2ae0ec4a310981f68ca *R/NetworkSim.R
b1f0969acd5bfb63498c862fa9348b9e *R/RcppExports.R
4efed2b4c3a115ae42a31f0829daa7fb *R/SiPhyNetwork-package.R
3837b2e3288d4aef690cc40f1e7e56bb *R/make.functions.R
9f947cdc71e8caa8f486bd3c15e55457 *R/network.gsa.R
df00050df437bf54b4cfa33f68b32101 *R/read.net.R
cc6a3296598ec048bf2e1ce47a5e3ede *R/sim.bdh.age.R
993edff54bf8fb69f4ea939b65f35697 *R/sim.bdh.age.help.R
94aa60ccd24eb578735134f92be980f3 *R/sim.bdh.taxa.R
71d3517fcc1b05af9634c96c52be8acf *R/sim.bdh.taxa.help.R
f16343916468dfa332ffbfefe844bcbf *R/utils.R
b663da0b3d68361b6b5341441cd6de18 *R/write.net.R
4b70aab342a02f121fdff4dba5e36913 *README.md
335f846cb0a42383396fb2477b64161d *build/vignette.rds
bf829af3a9ee1f19c95b79632cc5fc16 *inst/doc/introduction.R
62f3f6cdd54d3a497858562edc70d2de *inst/doc/introduction.Rmd
587fa209d004f784eb1f792eff791376 *inst/doc/introduction.html
613adf12ffafb8935d0fec04b619c310 *man/biconnectedComponents.Rd
92b7f882c1a344302014f939f7a7e4b8 *man/deleteTips.Rd
49991460969f84e2d470239d2e151199 *man/figures/README-unnamed-chunk-3-1.png
4b23a53f9321b988cceb89cea7bb1e7c *man/getNetworkLevel.Rd
0bcb9b69454207ce6911bdeea67a6265 *man/incompleteSampling.Rd
744e03e222a7a60aaf9950fd6990bca1 *man/isFUstable.Rd
dbb419c1a3966ba06839fab352ea4a66 *man/isNormal.Rd
18066a54001ebae93e00e1476bd639f9 *man/isTreeBased.Rd
7eb441428dde1ee1cf4f52690392a83d *man/isTreeChild.Rd
90d07abe205d9056b148a49036657544 *man/ltt.network.Rd
19b58f3ed589b7971e9f8e0c52b590ca *man/make.beta.draw.Rd
305d13f1d1df87c4e1483d5d53c709b5 *man/make.categorical.draw.Rd
a68bfd6414b38efece41227f95d8147d *man/make.exp.decay.Rd
82d61c46f3f10208f185c16d6ece1c20 *man/make.linear.decay.Rd
d45afa95746b869724ad319d5492cd8e *man/make.polynomial.decay.Rd
5a74f16441b7026e4f69b3ff913355ac *man/make.stepwise.Rd
742f115414e46df5fb97555668be75d5 *man/make.trait.model.Rd
708713c1240db767c4fd3bf85b614348 *man/make.uniform.draw.Rd
51cbed151230bfd6ea0f010aba6219cb *man/network.gsa.Rd
265ed3ac930cff2ae6a5df7e097e96b2 *man/plottable.net.Rd
d8ae7be252c0d8719f98cdeb1e972833 *man/read.net.Rd
dce8519348cd8622a7d463ae17af2f48 *man/reconstructedNetwork.Rd
5f459c5ecf33d6300567b6fac01daee6 *man/sim.bdh.age.Rd
552672bf1b771159c86e1d3483d40618 *man/sim.bdh.taxa.gsa.Rd
476e190e5649a3f47189ef5e08647d30 *man/sim.bdh.taxa.ssa.Rd
d386be98f3a22c8bea06fe762c36ddd7 *man/write.net.Rd
b57d2eb34d6e48bf0a8221654f7912e4 *src/RcppExports.cpp
ce8abeeef2cc14e56aa64a251bdd4c0f *src/code.cpp
a9fbcfb92ce044cb4d0067f2cf48d821 *tests/testthat.R
4f4b0a8bc9c5f0e8a08b4ff342ece887 *tests/testthat/test-write.R
3276ba4cf0a94a55e89c2ff81a1a6520 *vignettes/figures/hybridization_types.png
62f3f6cdd54d3a497858562edc70d2de *vignettes/introduction.Rmd
75676b5e3532208d974703e50405c2cf *vignettes/refs.bib
