8cc1f91e86656a5eb9c5da84641311d9 *DESCRIPTION
8f4cce520cba40e8b8b81c564cda5a47 *NAMESPACE
76e6e3b7331ac0c673977e2b91b7b025 *R/haplo_initialization.R
71538d5d81fa0314d7787d1665b5a904 *R/post_sampletrees.R
edcf9802fb0dde16f3ca820a7eced2d4 *R/pre_sampletrees.R
43f4da3532852b8e68d19cc882cf39f0 *inst/extdata/Example-g_accept.out
a2bf1093dc47151effbb35963cb28fd9 *inst/extdata/Example-g_firsttree.out
c4f599f81e102f56df1a945fd96b56df *inst/extdata/Example-g_haplolist.out
904d7e29a7366062b8f9e46537491381 *inst/extdata/Example-g_lasttree.out
6fe86bb51ad22d1a1cfb50e6fe16fa93 *inst/extdata/Example-g_postprob.out
174fbdcf895703199f6e68b21eb608b6 *inst/extdata/Example-g_samples.out
12199090c9e2141a94d1fca620b98989 *inst/extdata/Example-g_sequences.out
4aca28b0805cafe2b2f6a8a746108d87 *inst/extdata/Example-g_trees.out
ba0a7c56f49616941c888f5722e21e07 *inst/extdata/Example-h-2_accept.out
9172495fbfe3f4bb5302b6bc58cc10b8 *inst/extdata/Example-h-2_firsttree.out
6fe6c3a8bfb1d0eeb1a9a362a3d332da *inst/extdata/Example-h-2_lasttree.out
bdb8886de915a45b4e889d2c9a132d89 *inst/extdata/Example-h-2_samples.out
63fb4d213766f8072e512da99b1b90f7 *inst/extdata/Example-h-2_trees.out
b3907b7589b4ffbeeda6e29c15a9fabc *inst/extdata/Example-h_accept.out
de4bfba7bb28add64c3a6a865a081f00 *inst/extdata/Example-h_firsttree.out
395e0ac58b2a64fc9c8515af38cfaf96 *inst/extdata/Example-h_lasttree.out
adad1b915e34425122cf96215d66eb0f *inst/extdata/Example-h_samples.out
a0e20fb329b5ca7f965799c08d4a534e *inst/extdata/Example-h_trees.out
41e91300a4e54d95ba4eead05f2b5c2f *inst/extdata/example_g_pars
ac1ca4f72dfbc8d0d79d7dc7dce2e8d5 *inst/extdata/example_h_2_pars
c5099f26da677fe44f824011cc2f81ec *inst/extdata/example_h_pars
fea4ed6b08ae92fef0c40545c8b86120 *inst/extdata/geno_Theta8_Rho8.txt
79e475eab4b9d37db36bb37a1e384394 *inst/extdata/locations_Theta8_Rho8.txt
e0cfc2c401a8cc126fc1178458a8c371 *inst/extdata/sequences_Theta8_Rho8.txt
d78f9be609a324a964930ef5591d5167 *inst/extdata/weights-g.txt
403ff4ad66ff42b5649564d27b8675fe *inst/extdata/weights-h.txt
f454b1dfc95f6f4f449a8867c8440ee6 *man/Rsampletrees-package.Rd
768eef122eba6f9d6f06a14205fe8c36 *man/addTreeStats.Rd
aa4050af467f260ded20cb952640a014 *man/addTrees.Rd
abef1c15e9f9ad63d7891b6e4b20e2bf *man/changeArgs.treeoutput.Rd
3e3018431014b89845ee8082bc2659f7 *man/checkArgs.Rd
0ad244b13ffc2720e39792b3f3e61809 *man/estimateHap.Rd
43f87c99fb56f75dab15e33257f65b82 *man/launch.sampletrees.Rd
c8e58d4f36c68c266b6c9cefb2eb4334 *man/merge.treeoutput.Rd
1ac61ea047aab05845a07aee1e11293d *man/newArgs.Rd
cdc4ec28a5874d6acafca06102e5d3d0 *man/pkg-internal.Rd
d0aa3f4b76d2c7f90458a0d0a68ef946 *man/plot.treeoutput.Rd
d317779b3d22433711a34249c46419ec *man/print.pars.Rd
e64fbb351243f38b89cc520a77038ccb *man/print.treeoutput.Rd
7519ac77f93b5befc34c0bc9dc786ab2 *man/readArgs.Rd
b74891cdc710b2ca62d23ee4eb45cef0 *man/readOutput.Rd
e148eabb5502bf6978fbf1e212e98340 *man/readTrees.Rd
3ed7bd632ebbdaedbdd11fbaeafc8250 *man/restartRun.Rd
09c97d413629c736492858d0c42300aa *src/Makevars
ab85b7bfd1eb58bf6a9cbd807d8965be *src/Makevars.win
9a6863f290ee0f1580b5729f5a1d75b0 *src/UPGMA.cpp
213631be5a8268921e425faf24739d43 *src/UPGMA.h
ff9122fc1f86ce596189b048d551e6a8 *src/misc.cpp
f0e83468c1ede0f606362826792ca2bb *src/misc.h
6d8d75b9a5d22b14f30f9c5f7db08bc9 *src/models.cpp
efd224d6d023213871241bfac31bc3f6 *src/models.h
a8ecda2dc811dbd539f3b33a22dce87a *src/nodefunctions.cpp
6c726a0d5550322c984aeacc1cd81b94 *src/nodefunctions.h
be3d11d9bc81e3abe631671a5a6399cd *src/p1p2.cpp
ebac68250bbbf866f65a250caf9acad1 *src/p1p2.h
f57af52c4e6e9ca83477b30d46344e65 *src/p3.cpp
0a6e7159ced95c90232e05ee74e0c1b5 *src/p3.h
d32f75c2f9762c1d56296476fa788637 *src/p4.cpp
20eb2ef80ccdc27a9225380d8819cbc5 *src/p4.h
3c6ef5b02e33e768f96329cf54287938 *src/p5.cpp
edb0e10630e51fca3aab0e00caf609d4 *src/p5.h
fa1a353eba52c7bac1f92eea5034d235 *src/p6.cpp
7758b3e09cf1b92818a43d1e5f4f5780 *src/p6.h
f290758c78e58de6e8630432815b52c2 *src/p7.cpp
1e6a17f1f70234ce6cea21dfd64a61ea *src/p7.h
8e1840d73badc665ae00bcab1089eb46 *src/proposal.cpp
c09c9bdaa30acd65996e8e40d5a90c6a *src/proposal.h
d23c95cb763f5cf266fbcf4b3db0a315 *src/rcpp_sampletrees.cpp
6c5de27b1ecb9fff99ff008ab1c64aca *src/rcpp_sampletrees.h
92572c613a35d9995841ddf6fc4e60b0 *src/readFiles.cpp
4a8bc676bfa431d919a009f78e93c1fb *src/readFiles.h
e578c44a268f229baad7543ccb3c94eb *src/registerDynamicSymbol.c
967a25de6d905a8fb74da16bccaa2db6 *src/rng.cpp
2a156cb2de2a86678b66ad9f32fa6397 *src/rng.h
64cdd3b11876b758a4150d81b4a0d545 *src/sampletrees.cpp
3b114ce3782943fa856cee9a293ca26e *src/sampletrees.h
0ec352dece115f89e6cb53306fa6b7f3 *src/treeBuild.cpp
4d1f2081212abc4bfac96336b9a5d8a2 *src/treeBuild.h
7949055425a4a5c624a730f78792560e *src/treesummaries.cpp
186c6e76aa874237f8a554a00c21d7d8 *src/treesummaries.h
