f2e36894995e4d1e621221095fa491e6 *DESCRIPTION
080cc4e7283531cb3a293bc6d25c0912 *NAMESPACE
13d39f30e5d3caf8649fe5dc01c3319d *NEWS.md
154d0ea0f1ecb0ff1b83df81c2ff259b *R/ReporterScore-package.R
7efc16b8e1f0e67418303223023bc047 *R/calculation.R
96b9e774a102db987d5557cd63ea98fa *R/check_files.R
ad85dc448df075710148adab38b3fe84 *R/data.R
92a8429af3db8ec09b7237e0f3f62344 *R/enrichment.R
2739d4730b54578839cefc6b683cfee4 *R/plot.R
812e1e96d01af34abaa1f8ddc1657957 *R/print.R
7795d8159f400bbf6450e8f019d4117b *R/utils-pipe.R
2444eb7e7876ebe9758642565070136b *build/vignette.rds
c3e6392599368e00cfb95473499bdc54 *data/CPDlist.rda
a971a35fffbff5ec30435d46e539cf6d *data/Compound_htable.rda
1f19ba4a12bdb8e7f5ed49b8423ff5b6 *data/KO_abundance_test.rda
ae8d3b9980898fefe27784d006be26cd *data/KO_htable.rda
17ee3548077d59e0cf5327182e8af9be *data/KOlist.rda
4a2382a1a8ce6780486412137cd60134 *data/Module_htable.rda
09c4d65af39199faedfc9acba5353d88 *data/Pathway_htable.rda
15b66fd3484d1e91ed5e3d693fa1ea04 *data/datalist
df5afdb9849e088a2ec0789c8a958017 *data/genedf.rda
21019196b2f666619be162a5fa63ada3 *data/hsa_kegg_pathway.rda
9cfbf2ba94537d879a95ae7b8301aee3 *data/mmu_kegg_pathway.rda
5c7ff7ea6797db1efd833fd30dc76cfd *data/reporter_score_res.rda
9dafcdd8a106024421621265db1a8092 *inst/CITATION
a4e4f379edbffa69d76ecdb92b081a14 *inst/doc/ReporterScore.R
e3cb3ce983b06da5e0795cc907fe8626 *inst/doc/ReporterScore.Rmd
33fb02c86694221ba0c1b1730532ee03 *inst/doc/ReporterScore.html
76633f12a726d2a05afcf8d7e1fc3a5a *man/CPDlist.Rd
17e037551ff7465da3e97a34dccecb97 *man/Compound_htable.Rd
518a43e3208799417eecd5fe63bcb5d8 *man/GOlist.Rd
75c5c147bd8ea3987b436519c80a76e7 *man/KO_abundance.Rd
0b78433f2318201dea997604ea2037ef *man/KO_enrich.Rd
c748557542ab59924adc5298338fc68f *man/KO_fisher.Rd
f9af8048b2e2137655f03581b6dc9730 *man/KO_gsa.Rd
63b862791587f15b601e9ce26a873451 *man/KO_gsea.Rd
eee080f7561bcfd08c41abe3b3e3eefe *man/KO_gsva.Rd
9b87f32ed77957bc338fde9cf1499f2b *man/KO_htable.Rd
a771451f5f2a0efd5d25142084593e51 *man/KO_padog.Rd
6bb389c06f0de5a71208cb9a97417adf *man/KO_safe.Rd
dc13a9859261e7aa14dd1fd5d743cdc7 *man/KO_sea.Rd
5e3a5d494f63c81fbf501c6a58894dd4 *man/KOlist.Rd
5883a7bec5f7a782be694451e0a31b34 *man/Module_htable.Rd
1c7c08f6b8e59bd351b76968ee4f6a60 *man/Pathway_htable.Rd
01258a98aedf8f99407ba0d58e610537 *man/RSA_by_cm.Rd
93b6b8afea2cec764dc2df3aa92b6530 *man/ReporterScore-package.Rd
064f0879cc0b2d3b9b99bc3b36dc44eb *man/c_means.Rd
ab362c0940e602f427d40d06a2ab8164 *man/combine_rs_res.Rd
392150afc4172f5dfb569f38b8f9a0b9 *man/custom_modulelist.Rd
c241d8de80048ed66e5a27d27cf53ffe *man/custom_modulelist_from_org.Rd
0c15a687e408ab3b67d3e583e4b2ba19 *man/gene2ko.Rd
b05d9cbac5b2c21ba23f488ee530d01d *man/genedf.Rd
dc2f62c0acb1c237b7d75134524ecf1c *man/get_features.Rd
e5dcb10420e85f1789152d37770f81d6 *man/get_reporter_score.Rd
30f5fe37f6ac9386d7f9b84536b51b88 *man/hsa_kegg_pathway.Rd
8b00de4fb005ff0791dbfc38a34003c2 *man/ko.test.Rd
995fab0378dea3dd50fff40e3af7ff19 *man/load_CARDinfo.Rd
b14fb2931a4d35598754c961e7c838d6 *man/load_GOlist.Rd
1036c199b1fd39b315128e3d49aa2dcd *man/load_htable.Rd
c25612d3835164d4a8bdf20ade651ee1 *man/mmu_kegg_pathway.Rd
133b03e68645278a93a173903fb2bc15 *man/modify_description.Rd
5699ff1186174443299c71981b08c311 *man/pipe.Rd
1d7e210e66c90b2be1a54f574c441d5c *man/plot.cm_res.Rd
8dc6952d853e88df80d9cb17d339b4e9 *man/plot_KEGG_map.Rd
753afaa4f0640589350f70e0d762d9f5 *man/plot_enrich_res.Rd
4474e4683afb9b2df943fe6dbec588ed *man/plot_features_box.Rd
937056f4a8702380f96d9227a72805ff *man/plot_features_distribution.Rd
575b821c3aad9fd1e06b93c78d57a696 *man/plot_features_heatmap.Rd
0e6f9d821c2a7d13c2ef852d7edf19f4 *man/plot_features_in_pathway.Rd
b48176d9fc85c6ce86597584ab82205d *man/plot_features_network.Rd
b40c55307a7673d942e8d4dfca7ed95f *man/plot_htable.Rd
5657c37f198616999e04d16a4ab0118c *man/plot_report.Rd
0f821f675c2d5ef9c86081adf59e0104 *man/plot_report_circle_packing.Rd
e1113630f36b051b049b36765c9a036f *man/plot_significance.Rd
8c500bbd7ea86a51b963418d8b9d9806 *man/print.reporter_score.Rd
4d2bed2102d338fffa043a9b64fb1bd8 *man/print.rs_by_cm.Rd
cc102f44f5edfcc4ce6c3c53090bbb99 *man/pvalue2zs.Rd
0e3d84e0b77ce8508ca566758df915d9 *man/reporter_score.Rd
7f7091a4344b91f280feffd5f3333c19 *man/reporter_score_res.Rd
a8db51e0a019a5bc3c973351e3d08383 *man/up_level_KO.Rd
7f16f449c69f0b8e2874c79a2dddba17 *man/update_CARDinfo.Rd
cc862743b24c7c07084c724ea61a4cdd *man/update_GOlist.Rd
6de10949e0ce8be0573496d02445ae7e *man/update_KEGG.Rd
e3cb3ce983b06da5e0795cc907fe8626 *vignettes/ReporterScore.Rmd
