###Config file

# Software paths
R=/bioinfo/local/build/R/R-3.2.3/bin/R #or /path/to/R/bin/R
#python=/path/to/bin/python
#pythonpath=$PYTHONPATH # to change pythonpath if necessary

## Package path
pyclone=PyClone # command to start PyClone (here only PyClone as installed with conda)
pyclone_config=${input}/config_pyclone_light.txt #path to the master config file

## Directories
output=$PWD

## Plot output?
plot=TRUE #TRUE or FALSE

