Changes in Version 1.1.0

o new data files: NEO-PI-3 data for psychometric network analysis, verbal fluency files for semantic network analysis, behavioral NEO-PI-3 and an associated brain connectivity array for brain network analysis

o TMFG: fully regressed coefficients (partial correlations) can now be computed--uses corpcor's invcov.shrink when argument normal = TRUE

o bootgen: no longer produces plots; added is.graphical function to automatically check if network is graphical when method = "LoGo" or additional argument partial = TRUE is used

o bootgenPlot: output from the bootgen function can now be input into a separate function to obtain plots. Contains an argument to also plot the bootstrapped network generalization method

o bootstrapping functions all include a seeds argument, which can be used to replicate the previous analysis using the Seeds output

o PMFG: now outputs a list to be used in Cytoscape visualization software (sparseList)

o reg: a function to perform regression for a dataset. An argument can set the type of regression and for the matrix to be symmetric

o nams: a function to calculate network adjusted mean or sum for data (based on the hybrid centrality)

o hybrid: added an option for "standard", "random", or "average" betweenness centrality to be used

o cpmIV: parallel processing now available for covariate estimation (defaults to max(cores) - 1)

o LoGo: corpcor's cov.shrink is now used for covariance estimation when argument normal = TRUE; added argument to check if network is graphical

o edgerep: includes a list of the replicated edges and their respective weights in each network. A plot for this information is also available (defaults to FALSE). Also includes an argument "corr" which allows the researcher to select different correlations for examining replicated edge weight relations

o is.graphical: function to check whether the network is graphical

o cor2cov: function to convert correlation matrix into a covariance matrix

o depend: fixed Fisher's z significance test

o kld: removed function