0e063237913ab68f6f0c8938b37aa80a *DESCRIPTION
d1ab356ee2aeab74547e3b9d7053ca6f *NAMESPACE
ed8e8543445dcc2de1cdcb10c915abfa *NEWS
c3727f8acb487f259ece24db8e0aaf6d *R/ROC_and_search_functions.R
498aa08218abd1c8db607fa61a27c156 *R/calculatePower.R
80b40e482032d13ac6731a1664441a4d *R/calculateScore.R
df562ff35409edc36a6b7cfcffe8f3dc *R/checkDataObject.R
b8fb9f9ce8a460e47ee9d83ea723feeb *R/checkDataObject_functions.R
0af46734090a3d70c9fda6192834e480 *R/classFunction.R
80a0202e6d47c649d1bd870f7bae2b7a *R/cleanUpPheno.R
d653d871d4dff10b0c03e6c6e2317b09 *R/coconutMetaIntegrator.R
78b132e1a4e9fada054493b4e9220e0d *R/filterGenes.R
8b0d5fb0bc589c6a3be7d012cb686e8b *R/forestPlot.R
0f6c5b875b24ea736f058327d540c4d6 *R/geneSymbolCorrection.R
581285e4ba609c8ac645717fb83676d5 *R/getGEOData.R
86819c7f9b4f9bc8a9bf26dddacec30a *R/getMostRecentFilter.R
67a995c103fb01927339c074b070bbeb *R/getSampleLevelGeneData.R
9578f507cf6a6fe00dd5315303923adb *R/ggForestPlot.R
575e1c04918ae45040f8838c9fcb5596 *R/heatmapPlot.R
519c740d1a3ce2551f479429e70982fb *R/immunoStates.R
bcba5046d53012ba1cf4d2498902de3e *R/immunoStatesMeta.R
551da672db11c31ca7a050f24b05ad97 *R/imputeSex.R
c8df46489926c4b8f72a28a195d09c15 *R/lincsTools.R
7d57809037c39bdcf6c04b5845fa2be7 *R/manhattanPlot.R
530568820008fb6a87dc0d86b2bb0112 *R/metaAnalysis.R
e9487899a92bbb8a70ea635b4c51d2f6 *R/metaAnalysisFoundation.R
243ef9eba11a89e85344ebadfcd03270 *R/multiplePRCPlot.R
e1697284850050ab1e54add774d5bd19 *R/multipleROCPlot.R
0e7fc41928a016264bf00bf02094b815 *R/pooledROCplot.R
e639f633cdb61d341c19e5346734d002 *R/prcPlot.R
131c58e04d15d647cb17210b59749255 *R/predvalPlot.R
187a9f67b8ca53113b8fec4e144a1317 *R/regressionPlot.R
d69bf5f18bf91267f5c81283db0645ee *R/runMetaAnalysis.R
c3023deb96182774389e39690c082487 *R/subsetOriginalData.R
2a404b46620ac27065a4d898988b5693 *R/summarizeFilterResults.R
b124a5737a57b6e23487eb08b304af9d *R/summaryROCPlot.R
c4c456e5de775f1970d401687dce37fb *R/violinPlot.R
14c9919910907d6f761258f195153dc3 *README.md
6d8675061583916ab62dfe50092cab00 *build/vignette.rds
d5b5e53a875bf83583baca78b4e4be5d *data/datalist
bce5742cdc0ba93caa5fbc514e6bb2fa *data/ens_ensgID_table.rda
6b005a71c0c85e73c0c21556d48b228e *data/ens_entrez_table.rda
a89045e8768a6f18061f92189d3df708 *data/immunoStatesMatrix.RData
6d8409c8ac6db04e4c74c38b9cb34627 *data/tinyMetaObject.RData
e0bd73f5122841bba7826058eeed5df3 *data/ucsc_genbank_table.rda
04da981f84e9418391516a5033984a49 *data/ucsc_refseq_table.rda
33938c4976a50cfbbc4ac35c7550db36 *inst/CITATION
c4079f3681e0cbb38788d4b923e2e07f *inst/doc/MetaIntegrator.R
e8886b9710247fed1e1a314c781e3cb8 *inst/doc/MetaIntegrator.Rmd
fc3359738a80788753723610366cc1be *inst/doc/MetaIntegrator.html
514292bc9b1176a1a610ca7efa9612ec *inst/doc/MetaIntegratorRealExample.Rmd
3d2bcda1e452ac4aff0b772a8dce45af *inst/doc/MetaIntegratorRealExample.html
6eff2b65c9e07107a461bdd086363da0 *inst/lincsReport.Rmd
d477fdc4788d6eaef03dfe63afdef607 *inst/unitTests/goldStandardOutput/forestPlots.pdf
2e98673ac41ac90fb9addaa2b07aa4a7 *inst/unitTests/goldStandardOutput/rocPlots.pdf
120623a7cf1ba32e8d2af80b150cdff4 *inst/unitTests/goldStandardOutput/violinPlots.pdf
d41d8cd98f00b204e9800998ecf8427e *inst/unitTests/testOutput/temp.temp
184101b6d852b0e86df0774b96ba7c34 *inst/unitTests/test_backwardSearch.R
746d1fcf8d4fb1914c504f079519cf7d *inst/unitTests/test_calculateROC.R
bdb3d77fdbc4888269ce61c9f1aed69c *inst/unitTests/test_calculateScore.R
66f75bb9ace0d46ba72560dd2d212f87 *inst/unitTests/test_checkDataObject.R
0b9b7a4c682c51eeb6f82345d3de9152 *inst/unitTests/test_filterGenes.R
8dcb6e4493c06217f93da7df0b7f8666 *inst/unitTests/test_forestPlot.R
dddaf5310d1cfc1d66d64d9fd6a560b4 *inst/unitTests/test_forwardSearch.R
8b7fbb1ed4a648431b5e204852066bd8 *inst/unitTests/test_getMostRecentFilter.R
d68c137fa7359496c8606c4255c37781 *inst/unitTests/test_getSampleLevelGeneData.R
fcaeaf54ea33865bfbe1ef0dae993774 *inst/unitTests/test_rocPlot.R
9819f3b2efac1365376d8392eb9ecf25 *inst/unitTests/test_runMetaAnalysis.R
d2ce4221af437721c4f2a7e6c37f7849 *inst/unitTests/test_summarizeFilterResults.R
0539b32337bca50f76cde6d085babc84 *inst/unitTests/test_violinPlot.R
bba28f2fb9ad3d3f34ba31386841455f *man/backwardSearch.Rd
ac4554291317336448f865cf93d7df56 *man/calcMetaPower.Rd
0b83852b132ee695ca544d7c1270e2fd *man/calculateROC.Rd
fa609ab5475b1d9f76f983815c1b2d40 *man/calculateScore.Rd
7b435ad3e069bec3dbe33189d14a3278 *man/checkDataObject.Rd
cd760c7ecb22f10b3fd14aad711b9b6c *man/classFunction.Rd
2d6ecd66d74dfc9b16278985c5b025c8 *man/cleanUpPheno.Rd
18c81e826034bee307f87b03d7fcbe28 *man/coconutMetaIntegrator.Rd
7de1693da7dfbb4ecf16bf02e6aa0555 *man/ens_ensgID_table.Rd
dabdadf3a29ce44a0e2bc3d31b5a6cac *man/ens_entrez_table.Rd
edf4f7f384bd94138a7be6644d40f1a7 *man/filterGenes.Rd
a13b8a50635a0af8d1b38740e684fcb4 *man/forestPlot.Rd
689a8be783f4ef8622d12b4f54423bc1 *man/forwardSearch.Rd
67a283f451cfdcac3a0e14b0302ce52a *man/geneSymbolCorrection.Rd
077b8ddf1ded1b6207692c03b18835f4 *man/getGEOData.Rd
842c14a329d54ff20885b465a4de89f9 *man/getMostRecentFilter.Rd
9d6ec65c2987950e4226c5d3ebf7faf5 *man/getSampleLevelGeneData.Rd
8b572a19b8efcbf7cabaac3060744081 *man/ggForestPlot.Rd
5fd9f3b3d06d72d70bfee6061d4cfffa *man/heatmapPlot.Rd
789acfcf177b6c17a7c22199bdf85e50 *man/immunoStatesDecov.Rd
fb948e2eaa058d6e8e0f69015b72603e *man/immunoStatesGenePropCorr.Rd
2872b1f92ecd0ed015417f9a08d01cec *man/immunoStatesMatrix.Rd
b0e28fd8d20dad24bfdd7815010ecaa7 *man/immunoStatesMeta.Rd
0afee0e4a5b8b49e6f9d215b73fb9bae *man/imputeSex.Rd
1af9a9c8e01e804c18cc509d4da8585b *man/lincsBaitCorr.Rd
f4b1f1b4cb9fd3965cb26bd7bc04f8c9 *man/lincsCorrelate.Rd
c158c5abe281bab28f66b1578d8eba89 *man/lincsTools.Rd
72e721de3cea3268888c4a439cf6d61a *man/manhattanPlot.Rd
ec53d0533c18f2bdfabd4257964e83d5 *man/metaIntegrator_public-package.Rd
0bcb36379a1cab715cceb53db1c8101c *man/multiplePRCPlot.Rd
189be12ac91d02560f7929ecf620180e *man/multipleROCPlot.Rd
1aeae5f49e402cd804393027e2a9edc8 *man/pooledROCPlot.Rd
17ff6b7a2b92217b5acaf3eb31f84706 *man/prcPlot.Rd
1c3bffe8f26acfbfd98e0a408d701df4 *man/predvalPlot.Rd
c47d62c23ef8b1d7421c7d5c53eac58e *man/regressionPlot.Rd
b2dd5bb14e248b4150562b4a38f5517a *man/rocPlot.Rd
14c40a97b07568e6243ae2555d06d6f8 *man/runMetaAnalysis.Rd
6890b979ec1c1b61f18c2bdb7971ef83 *man/subsetOriginalData.Rd
ce3cc2a48c9be1d0d6f2110f56bd5ca7 *man/summarizeFilterResults.Rd
738e4928b3bfc4bcd0900d3d7e226bce *man/summaryROCCalc.Rd
68dfe2ffaec076dc264a3b58df0b3008 *man/summaryROCPlot.Rd
d3bac92ad59254126c0c818f3561a9a9 *man/tinyMetaObject.Rd
aab57155ccc65980220eebfefc7f6bf2 *man/ucsc_genbank_table.Rd
4e14827dd467fda6260de052eafa59bf *man/ucsc_refseq_table.Rd
5574b3d535eb0c85c537df4efdec0dd7 *man/violinPlot.Rd
c2588c853c4dde37c8da752b99b2978b *tests/runTests.R
e8886b9710247fed1e1a314c781e3cb8 *vignettes/MetaIntegrator.Rmd
514292bc9b1176a1a610ca7efa9612ec *vignettes/MetaIntegratorRealExample.Rmd
38d20b68612fd74bbf0a131feb37017f *vignettes/images/Eq1.png
b1808b8d583f0a6cefb3a91587df92cb *vignettes/images/Eq2.png
3031a44e2cd711a0a417e7bc76cc579d *vignettes/images/Eq3.png
c366327b9f4dcaf2460c0923646205a4 *vignettes/images/Eq4.png
3fa34301ec2515206be58b9098635998 *vignettes/images/schema_simplified.pdf
88417ba4f854fb58e1f1b993c7de79cb *vignettes/images/schema_simplified2.png
