a1b1831b021e39e2d9c4d3c5e97f1b91 *DESCRIPTION
7a4d20391e70052631531ec0d9322db3 *NAMESPACE
984fde8792caedeb05ff2dbc3e977038 *NEWS.md
8fcca8419edb8e5f6f05edb5a9ab164a *R/RcppExports.R
bf9d7e445b23d74a87848ab6b96135a7 *R/compile_reactions.R
8187cadc939326b491c14d43b5db902a *R/ode_em.R
2258529f29949f8295fbd6511399efea *R/package.R
29c88d8ada2ce642e79c72cd95c598d2 *R/port_reactions.R
20e60bf0e3cbe5102622be377a595b99 *R/reaction.R
c21bd34e407b6fb9ea2b30394ae65d5a *R/ssa_btl.R
f795e74184f331a7f8b2c10da7c8ba2e *R/ssa_etl.R
b7b8f91d2169ae81380dc6a6688cb423 *R/ssa_exact.R
22e74d4118b9cf37ecaf2fe701d7015a *R/ssa_method.R
ca7398e9db8560ec887e2031c8154b2a *R/ssa_plot.R
7c6b33c3847af3ae87368e6ed3580f31 *R/ssa_simulation.R
acbf8be5ab92cc08b9c202088cbcab07 *R/zzz.R
55bb47f44f1d2aef594d5134dc0062fc *README.md
b6f42d644d00993b5da6c1d26baee5d2 *build/partial.rdb
e87955ca8c7673f2aa04cd3f0ee8b557 *build/vignette.rds
d59ce7b2192f3a56beae99cc4bd782b9 *inst/doc/an_introduction.R
2e880d98e5cfe831cfb9509005ebd6bd *inst/doc/an_introduction.Rmd
a655c1274250db0d339b5fb077f488e9 *inst/doc/an_introduction.html
3a42a67874eb888aeb3c26e7b29c93a4 *inst/doc/converting_from_GillespieSSA.R
02f3e359bac480ff1cdeb577b4c77fad *inst/doc/converting_from_GillespieSSA.Rmd
02999f52b4b61c3ee53e996368d871b1 *inst/doc/converting_from_GillespieSSA.html
34f7abc2a402531d779ceea05c33998e *inst/doc/decaying_dimer.R
bc2936c466cd068dd2a19585878fd133 *inst/doc/decaying_dimer.Rmd
589ed32df6dc698b2f4424ae9b0e10d6 *inst/doc/decaying_dimer.html
a239932fce4093e38c4f3250949dab9b *inst/doc/epi_chain.R
afec1c7d4d4604ab05532bfa4f915592 *inst/doc/epi_chain.Rmd
b89f3807375a681b9ade91d157a1ee5d *inst/doc/epi_chain.html
3438c09bf83b5ac309506fb29315963c *inst/doc/linear_chain.R
2d52d621734b6049cb2329bc2ca87681 *inst/doc/linear_chain.Rmd
ea504de9c469be5b36262262feb2715f *inst/doc/linear_chain.html
afdf98a936842d2b2f713b808bf0fd3b *inst/doc/logistic_growth.R
effb05388f34ff7e3e44528d816e99d4 *inst/doc/logistic_growth.Rmd
945454d3f23f60f47b0f050ba262dc18 *inst/doc/logistic_growth.html
fcbab7f3dfd89cbd58307d1fb3498887 *inst/doc/lotka_predator_prey.R
1f11dc84adfe1275ddccedd70499c9d8 *inst/doc/lotka_predator_prey.Rmd
861cf0b9a725501c9a69c1c71ca6027c *inst/doc/lotka_predator_prey.html
55325f1fd37ef6d6559831972536067a *inst/doc/radioactive_decay.R
d942088d72be1c22c1a69ed91d2b2fc6 *inst/doc/radioactive_decay.Rmd
8a63b5b24873571063ef540f77e783a6 *inst/doc/radioactive_decay.html
e1fa1ac21bbffa247586d57362175a35 *inst/doc/rm_predator_prey.R
4b2aab709a1d040e68976c1ab154b20d *inst/doc/rm_predator_prey.Rmd
4b9d6296629628429460bc8241073ebb *inst/doc/rm_predator_prey.html
1ecddcbcf77cb4939076f89170f77b75 *inst/doc/sir.R
6d7c039d97e12d246b67e02b4b186ef3 *inst/doc/sir.Rmd
00c833e9763f00be1d34d5859b9deb84 *inst/doc/sir.html
885656c8fdf1ba13aede0673c30a019c *man/GillespieSSA2.Rd
b08c1b05b1b2fa88f8b552c62c54efc9 *man/autoplot.ssa.Rd
edbbb3bb1ca61fbb2f6dc2cd2469fd14 *man/compile_reactions.Rd
fd4c47d761c9f639c188d297da449d64 *man/figures/dependencies.png
47b54f1c878c06fc218c268b82d13ef4 *man/ode_em.Rd
c0210cda6bede49cfe3187de64b0563b *man/port_reactions.Rd
d25d966dbf3fed048815f86e37d149e1 *man/print_ssa.Rd
003f2ed2f7a5820b7e778222e971ded5 *man/reaction.Rd
249b60ae24d643cdc14942bd761f1452 *man/ssa.Rd
032520bc72e0f9ca30b91dbdea4c414c *man/ssa_btl.Rd
36b134ba50341247c4f15abc0328e0a1 *man/ssa_etl.Rd
ca1bc07dc11c6a0af5bdec024514398a *man/ssa_exact.Rd
ffcbd780a1d59d9cf7221e533168bea7 *src/RcppExports.cpp
e372bcef5c17f419bb097ceb4faac4dc *src/ode_em.cpp
9e1d45a2fe4d7c5632cf4c333f90e1ef *src/ssa_btl.cpp
22d3daae3990928fce6fffbb657a1396 *src/ssa_etl.cpp
3b960fed578440c1e0bd9013ee0ec7e5 *src/ssa_exact.cpp
b461dd928b90cb3c7ad01db3c01e7869 *src/ssa_method.cpp
ecab019f3b376fe4149f3425293c4016 *src/ssa_method.h
14ea6aec9f4f57f2e87dc4acc2e49cc1 *src/ssa_simulation.cpp
d2da4ce08e70c1728f959f7e47bf94ee *src/test_helper_funs.cpp
519f20d4b66bf43e926da24ee495c7bf *src/utils.cpp
bde4cd198553f4f2f2bb64ade0b2f79e *src/utils.h
1f805c4be7c74e9df39994f09c36fa25 *tests/testthat.R
b42108b1f1173cd9d808546e2add30a1 *tests/testthat/helper-test_propensity.R
3f38c64eff5561aafca0ad2172b8874e *tests/testthat/helper-test_ssa_step.R
9598bac6aa535675370ee8e7fabeb5fe *tests/testthat/test-compile_reactions.R
abb0748b010db2641b963047e151e6dc *tests/testthat/test-ode_em.R
ed1ac27aaa28558d05f8ba4ee2327c4e *tests/testthat/test-reaction.R
04384c9eb910ad0f699875c1081fd4ca *tests/testthat/test-ssa.R
9bf4dc603912d1257df777b56624f433 *tests/testthat/test-ssa_btl.R
36fc2bb46a63705dfb136b951eea2c6f *tests/testthat/test-ssa_etl.R
95e9d9020887f6a76fcf9cf6471f3667 *tests/testthat/test-ssa_exact.R
2e880d98e5cfe831cfb9509005ebd6bd *vignettes/an_introduction.Rmd
02f3e359bac480ff1cdeb577b4c77fad *vignettes/converting_from_GillespieSSA.Rmd
bc2936c466cd068dd2a19585878fd133 *vignettes/decaying_dimer.Rmd
afec1c7d4d4604ab05532bfa4f915592 *vignettes/epi_chain.Rmd
2d52d621734b6049cb2329bc2ca87681 *vignettes/linear_chain.Rmd
effb05388f34ff7e3e44528d816e99d4 *vignettes/logistic_growth.Rmd
1f11dc84adfe1275ddccedd70499c9d8 *vignettes/lotka_predator_prey.Rmd
d942088d72be1c22c1a69ed91d2b2fc6 *vignettes/radioactive_decay.Rmd
4b2aab709a1d040e68976c1ab154b20d *vignettes/rm_predator_prey.Rmd
6d7c039d97e12d246b67e02b4b186ef3 *vignettes/sir.Rmd
