08dee738ba168600ce82e514ad70cbd0 *DESCRIPTION
d0b1c3d4efd293aac42934c549d738a9 *NAMESPACE
bbe54d80800f0d016e61cbde2c06c7e9 *R/CNV.R
3d44c225a0cbd3cf8e594fb213d78939 *R/Merge_methylation.R
46d72124b56c6b58c4a66b93d025817b *R/Proce_cli.R
b755d9bcd970fe910053c9dd864472fb *R/RNA_seq.R
51f67176bf22ca87079cad93fd7145e5 *R/SNP.R
d7aedc39d01292f014c4ec0880fdc591 *R/TCGA_id_conversion.R
001b310b9431dfbd580861738859b90a *R/ann_merge.r
e09900945df6271b6fe8d2005d0abb9a *R/calculate_mean_module.R
58754926a01f75b933c85af56ae6b3aa *R/calculate_mean_profile.R
95a55b473eca590d985693e2d0df992f *R/data.R
ccf5400ee481264f5fb944210410c18e *R/fpkm_count_conversion.r
dbb586294d78847531ada8e26ce35176 *R/id_conversion_all.r
fc47e35b55a389a9218d3c2138ebf559 *R/kegg_diff_gene.R
93579a3dbbb5e4e9b5023ba677eebe16 *R/prepareChi.r
6b90322adde66edab7a4e405e69980b0 *R/rep.R
116fd681c6330812e4ee0cae80d836e7 *R/sysdata.rda
4628929452643ee0a1cf158cc9869898 *R/zzz.R
327c8c16d4f249f100794b0c3148d444 *README.md
4dee4a5d9dc4ba9fb773efaee848f632 *build/vignette.rds
070dceb636fc0300be4b8976b81f767e *data/GSE66705_sample2.rda
2c3b1a331bbc035f9c9dacbba7409d53 *data/geneExpress.rda
e06307da70e5ba9acf08f891c6a5281e *data/gene_cov.rda
0d27064c8e20b1cc6fd928a98e5812a7 *data/kegg_liver.rda
e7b32221f71207346295f527d6840298 *data/module.rda
5c158ca8f5329118aa349868c27c2207 *data/profile.rda
a2654539d5e3d3141966e92ad9606b4a *data/ventricle.rda
43a66acdf74d3eb3433a36a36d206f1a *inst/doc/GeoTcgaData.R
f296d1cf66e2d75f2e2ac497b9cf5957 *inst/doc/GeoTcgaData.Rmd
6823378fc4b771ff68147b146dfb73d4 *inst/doc/GeoTcgaData.html
24b78cdcc2434bb768c734a29f6434bf *inst/extdata/build_data.R
43bfcf92db10522bf7d45c369ba5e839 *inst/extdata/cnv/00de3/HONGS_p_TCGAb3_75_76_77_NSP_G.txt
075dec574908869219c906516fd9dca8 *inst/extdata/cnv/00e8/MICHE_p_TCGAb_428_429_NS.txt
3dde8dc25536e8e332af41d7a24b789c *inst/extdata/cnv/00f9/MINAE_p_TCGA_200_202_203_S.txt
622ac099fcc605ac6dc37bda4bb8074e *inst/extdata/cnv/0a01/KNELT_p_TCGA_b123_131_S.txt
64330603d35743df897919ae584c5a61 *inst/extdata/methy/0a0b4/jhu-usc.e.H.4.lvl-3.TCGA-13-1405-01A-01D-0460-05.g.txt
80854919652888aef5c861250be935cf *inst/extdata/methy/0a0b4/logs/file1.parcel
f15727a813fd30e12f12f17cd0f2a9d2 *inst/extdata/methy/0a6b/jhu-usc.e.H.10.lvl-3.TCGA-30-1880-01A-01D-0652-05.g.txt
52a8d94da191da9edf0197914a7b8062 *inst/extdata/methy/0a6b/logs/file2.parcel
c9de45e09425dafb46373b4173a11c28 *inst/extdata/methy/0ae7/jhu-usc.H.8.l.I.TCGA-30-1714-01A-02D-0563-05.g.txt
f4d5e287a725f0ecfb996b93a120e785 *inst/extdata/methy/0ae7/logs/file3.parcel
066bf478da051d3ecf2f54a7e0dcbd44 *inst/extdata/methy/0b32/jhu-usc.e.H.5.l.TCGA-13-1510-01A-02D-0475-05.gdc_hg38.txt
2505c430fed6013a725a2e95bae710fc *inst/extdata/methy/0b32/logs/file4.parcel
00453808795d9ebfdfdc99d1701d1a9a *inst/extdata/tcga_cli/at.orl.TCGA-2V-A95S.xml
02f2857e34873e819d6a1eba5754c18c *inst/extdata/tcga_cli/ati.org.TCGA-2Y-A9GT.xml
b01ae925009c5b86a0e430fe2b9889dc *inst/extdata/tcga_cli/ats.org.TCGA-2Y-A9GS.xml
38bd2d6df0da5c5e6dfe4121a79cdf5f *man/GSE66705_sample2.Rd
d71cf346d0e136eeae7d54f3afa2aa29 *man/Merge_methy_tcga.Rd
62622e7d3aaf2e0dc3059fe3e542fd2f *man/cal_mean_module.Rd
330269e69925a01938c0fc8a88c23b93 *man/classify_sample.Rd
17a47e78c256d4f1964017c8ee7abf1d *man/countToFpkm_matrix.Rd
1c45dde6d52dab8bf44b3ac22999cf93 *man/countToTpm_matrix.Rd
1162518dc9b3662a8ba790417dd5d542 *man/diff_CNV.Rd
c126935611d0c34e2bc9e8d4907a3112 *man/diff_RNA.Rd
93c3cc87c5dc8f0611cb3e9741a5d119 *man/diff_SNP.Rd
876120b46735cc6715da213581dba9b8 *man/diff_SNP_tcga.Rd
a9b408aeab2c6f0b7aedfadc952e65ee *man/diff_gene.Rd
b01456df93c877677ca14deffd51b2dd *man/differential_cnv.Rd
15d2fa73477cf8b62fc19aa75b949888 *man/fpkmToTpm_matrix.Rd
dd1ef1c2c8d6ce2f699b62aa912850c9 *man/geneExpress.Rd
120f56aafa88fc04b218a5eff7ea3feb *man/gene_ave.Rd
9ee8ae7288c0bb7d1fcff0a2297ad4ca *man/gene_cov.Rd
a1179bc9aa8f2a775959cffa304d51c1 *man/id_ava.Rd
9b61a4977d073fe0430e6e31283a7a16 *man/id_conversion.Rd
e6ad818e251a1d337a20046cf9bc559f *man/id_conversion_vector.Rd
609d5f4bd65f9defc3e7bd55c4eb9324 *man/kegg_liver.Rd
534efae7249b2ee760729d6c358748b3 *man/methyDiff.Rd
47ddd0eda00e2e8a7d44104e2c43cb5f *man/module.Rd
40a95c76b9b8ababbe56ebac71f6c190 *man/prepare_chi.Rd
f27c12d81b9574c5825e99565c25a85a *man/profile.Rd
0d69d468cf75ab333cb5f18513b08e8e *man/rep1.Rd
ff66b9c55c88b6eec7a6964ee32dd04a *man/rep2.Rd
3e03273105878977812b2517adb215f5 *man/tcga_cli_deal.Rd
fed79a2ab0a92708fe3487f658b1d9d3 *man/ventricle.Rd
f296d1cf66e2d75f2e2ac497b9cf5957 *vignettes/GeoTcgaData.Rmd
