# Generated by roxygen2: do not edit by hand

export(build_index)
export(get_fastq)
export(get_metadata)
export(get_srr)
export(process_geo_rnaseq)
export(run_fastqc)
export(run_multiqc)
export(run_salmon)
export(run_tximport)
export(trim_fastq)
import(EnsDb.Hsapiens.v86)
import(EnsDb.Mmusculus.v79)
import(EnsDb.Rnorvegicus.v79)
import(org.Hs.eg.db)
import(org.Mm.eg.db)
import(org.Rn.eg.db)
import(tximport)
importFrom(AnnotationDbi,select)
importFrom(Biobase,pData)
importFrom(Biobase,phenoData)
importFrom(GEOquery,getGEO)
importFrom(GenomicFeatures,transcripts)
importFrom(RCurl,getURL)
importFrom(XML,getNodeSet)
importFrom(XML,xmlRoot)
importFrom(XML,xmlTreeParse)
importFrom(XML,xmlValue)
importFrom(parallel,mclapply)
importFrom(rentrez,entrez_search)
importFrom(utils,download.file)
importFrom(utils,read.csv)
importFrom(utils,read.delim)
importFrom(utils,sessionInfo)
