88d07f78144d7e1c60f5718c5e9c5e13 *DESCRIPTION
fc61963200f2262218208b22369c5815 *NAMESPACE
81205196e7af95d3b5a786b42629a39f *R/build_index.R
d45250fc6e7d3bbc832a16a97addce68 *R/get_fastq.R
d8ce15adcdca08494d0f378effe64506 *R/get_metadata.R
2b10fa6894e5262fd5989df56749570a *R/get_srr.R
9e244ee800288733a596ca37ba9ae020 *R/process_geo_rnaseq.R
b3c823571317ed938aa028cc855653f2 *R/run_fastqc.R
7dcb935fd2037b5ea1012eca1a6065ae *R/run_multiqc.R
9d9031c705b11ce9661bba7ab50cd288 *R/run_salmon.R
cc3174e135ed84e536ecb5eb14ca1bec *R/run_tximport.R
4f582f07e1a394855e88410decf43668 *R/trim_fastq.R
d212bff89ae7359cd4f6ca967dd1d91d *README.md
c365ad19baaabb2799d4d9bb8cac21e3 *build/vignette.rds
cb5fddd2bdfce8ee9ad9accc5688f5ab *inst/CITATION
b7bd3e59044422ddc70d9adfcba6c2ed *inst/doc/vignette.R
f55295f540aaf80080d7b88a8eb8cfc5 *inst/doc/vignette.Rmd
5ae1eeb28f00cf44a3a147ed510260ce *inst/doc/vignette.html
f2c2e40dbf6c90e841ac640104a992ed *inst/extdata/NexteraPE-PE.fa
7867e2dbfd301758acb0f1eefaf7594a *inst/extdata/SRR5890521_pass.fastq
dbe81d7c22bb0f956044d84a6c85e1dc *inst/extdata/SRR5890521_transcripts_quant/SRR5890521_quant_new.sf
52ef7a7f9639d0277e27baa8b25374bf *inst/extdata/TruSeq2-PE.fa
5fe54165fba9cf201f97e0c4cfeaad5d *inst/extdata/TruSeq2-SE.fa
356e426e476e887c83707a484e52a319 *inst/extdata/TruSeq3-PE-2.fa
8440d286248134ac0df417272f9a86bc *inst/extdata/TruSeq3-PE.fa
1e7fbc11c060943720459864cd48235d *inst/extdata/TruSeq3-SE.fa
9677153d021b69f09f0830691e63f2e0 *inst/java/trimmomatic-0.36.jar
9677153d021b69f09f0830691e63f2e0 *java/trimmomatic-0.36.jar
950fdef484a82716836c35aea794594c *man/build_index.Rd
9a2bce4cd491ea60bd083c8d0dc42308 *man/get_fastq.Rd
df5100dd0f6b6ca7f5f10b72992aa6a7 *man/get_metadata.Rd
9cf93d144f749bfef89cc73419233191 *man/get_srr.Rd
a41f2a06df42eb525c9244fafb48876f *man/process_geo_rnaseq.Rd
a56110a0a2d4519ac3f43608066ad664 *man/run_fastqc.Rd
7cc306b6f203ab71ca02d2ef175223b7 *man/run_multiqc.Rd
aebaff4e52bbf8e18b571ca0c63d9fc4 *man/run_salmon.Rd
74ffea2c94c79416b88af9ffa2470b66 *man/run_tximport.Rd
b830e8317ffdcd0a74b7c7f6dcec81b8 *man/trim_fastq.Rd
256ef9cdc531ac1b5b823318cc8bfb7a *vignettes/ref.bib
f55295f540aaf80080d7b88a8eb8cfc5 *vignettes/vignette.Rmd
