b38b9c6ecb5054a5fa1995db7b0ba58c *DESCRIPTION
68784c76ac068dba590c435af9f608a7 *LICENSE
594d10f97b2327459a8fcf3fe18e01b1 *NAMESPACE
141b1d28f13a240baa4108be1f9e7c14 *R/ARsim.R
2246dd04278a9880276fa1d86fc38e9f *R/BD.MCMC.SC.R
c92af18993f3ffca6a065b9045d09770 *R/BD_EM.R
587471b198f298778aba1fe33e5f6116 *R/BD_EM_helpers.R
f85336ac582c84757f41eb36095ecde3 *R/BD_EM_inference.R
fc8181c8ec371bdab05f89beb2b3ebab *R/BD_EM_inference_helpers.R
1d16573ca516f414a0b310f0f766e3f5 *R/BD_MCMC_helpers.R
033a82dc405f4d4d4c1fdb7df4fbfb0a *R/BD_calc.R
9e1b5e030df0a61595ed4b6b7175ef02 *R/BD_calc_helpers.R
34a5972f439b227c820ee5d10fe5151d *R/BD_chooseSim.R
b288130e2c1417ac9361f11cb9a3c9e5 *R/BD_chooseSim_helpers.R
8e67206cc7d8b79988dfefa8e7b7161b *R/BD_exactSim_helpers.R
6cf128c842a35ebb7426f393762ea26b *R/BD_sim.R
28ca74fc625219d623bc84a1be9e50b5 *R/BDclasses.R
e4a5e1de7722a2574f37221e0aae30d7 *R/CTMC.simulate.R
a1207030e59ae83468ea39f75bcad4be *R/CTMC.simulate.piecewise.R
fc07b73af6179071187a7d58786d6366 *R/CTMCPO2indepIntervals.R
e9d67a2c233f402b2a7edeefba01df3d *R/CTMCPO2indepIntervals_helpers.R
2bebbeacaa460094b71908c078471026 *R/CTMCutils.R
31de49c603129984485e98999c6e995c *R/CTMCutils_helpers.R
013453247d296f240b0a41963a6b05c9 *R/OPS.R
51b8958eda265f4720d96123caaa35fd *R/OPS_helpers.R
b06570f40dc57096f32edfb9b8981b60 *R/accRejSim.R
01c12c0271fa551cf22e322a1123107b *R/accRejSim_helpers.R
d262f9add46e79213d4c252451d10a1c *R/combineCTMC.R
4aa83b2f70564c034b9e8e3b025bce16 *R/getDataSummary_helpers.R
df7dcc459c86e090cc1f1bc05a965792 *R/numDeriv.R
df7dcc459c86e090cc1f1bc05a965792 *R/numDeriv_helpers.R
ede124d4e6bb3905ecd6375aee6ec15b *R/sim.condBD.R
8f1cca746b194a56e369296bc6b10ec0 *README
f9664eff37b276854c20d7ba633bbf92 *inst/doc/BD_EM.Rnw
83846096ee29fb4759cfbe2e7266eb64 *inst/doc/BD_EM.pdf
8f99ee843d8f03138075d7871186cbde *inst/doc/BD_EM_wImmig.Rnw
616149686b51dd870e4d452f5fac02da *inst/doc/BD_EM_wImmig.pdf
50a74f3f4bdfe77b2f2eccef99168cdd *inst/doc/BD_MCMC.Rnw
e75e98310d0515800f6e7889195a65dc *inst/doc/BD_MCMC.pdf
0574c427b6dee89c8a34078eb620ccd1 *inst/doc/sim_condBD.Rnw
eab0cd11576199e1a6db4b884dd19453 *inst/doc/sim_condBD.pdf
b334c661b67c53763a635d39dcc9fcba *man/ARsim.Rd
ed71ed57de6b915674b7939f0cecab46 *man/BD.EMInference.prodExpecs.Rd
0464c669f012a2d9eda057d794c04fae *man/BD.MCMC.SC.Rd
c2ff7fd4f59dc50d54c4993898994f64 *man/BDMC-class.Rd
44b7ea3a599988f6a4461879947b0f27 *man/BDPOloglikeGradSqr.CTMC_PO_many.Rd
9190e774f0edf21312f4d85607b47306 *man/BDloglikelihood.PO.Rd
dac21ee102d7c0a409b12c20d70da27e *man/BDsummaryStats.Rd
7dfbc5a8e455f7d6878e5f7cc3fe0cb6 *man/CTMC-class.Rd
fa67a4672e65781988b8a437c4ccdc21 *man/CTMC.simulate.Rd
474e384f35e6adfeb45a180db36cc491 *man/CTMC.simulate.piecewise.Rd
c172aea2608c3bc612d26524a78f5bd2 *man/CTMC2list.Rd
b08e03330aa0c9fbab0113ae52159ee5 *man/CTMCPO2indepIntervals.Rd
f3a46fda955195c960841df442177c53 *man/CTMC_PO_1-class.Rd
1ec36c06258a41b993af6fe2a0941e37 *man/CTMC_PO_many-class.Rd
f6604d0f9aa3880bf240acf74b15cb0d *man/EM.BD.SC.Rd
30d4361c22144fcab2879994cfc77142 *man/EMutilities.Rd
35eac30f5ae0edcefe6197f97d6fafad *man/Nij.Rd
3e218ebd0a11e5b205afaf9b38e4ed98 *man/Nplus.Rd
aca7ff3f0499d343ac2d46d9532ac8c0 *man/add.generator.Rd
87f7465b190bfe4a024b0ce7dc8c6e5d *man/add.joint.mean.many.Rd
8c049a83cf0af666e512e4b1461b3570 *man/add.uncond.mean.one.Rd
c958d6034c6862df92cbc31531e057f9 *man/bdARsimCondEnd.Rd
575636505443bcfe180c0ae3fb86d50f *man/birth.death.simulant.Rd
dfab65faa7874e5d5b8cebf1fe0c3b92 *man/bracket-methods.Rd
09844e1e5ec3157d4efaae85552b23de *man/combineCTMC.Rd
435e96661c3864ce6a96bf5e0cee0f3a *man/derivType.Rd
8be3904cd697c8b4b7184ae9f1f40911 *man/doublebracket-methods.Rd
63dfd1518fd9a244e2444550c1cbfeb2 *man/getBDMCsPOlist-methods.Rd
a28b0908163e9a28cacd7baad04f5d88 *man/getBDinform.PO.Rd
c8a79898940d1b4a691ed3bb9352df12 *man/getBDinform.Rd
eff583054ff5e01db46b16246d7362e7 *man/getBDjTimes.Rd
f146a003693cb9a518b6cce8535f1320 *man/getDataSummary.CTMC_PO_many.Rd
57894bbb6083bfecdd085bc1e49655ee *man/getInitParams.Rd
3638af9c5e8f051d7ebf598fc9ccbcde *man/getIthJumpTime.Rd
0b5e03fe2793fa6fbbc5e84e58fe267e *man/getMCstate.Rd
e80b70c1c8935c775fa8c2df3b8c9816 *man/getNewParams.SC.Rd
1fcab4d11eed409c483881f73a81bd63 *man/getPartialData.Rd
2b7baaaa7b9f4e6936783b3e7ed36741 *man/getStates.Rd
de8bc1f172302a21a07005dd4328464b *man/getSubMC.Rd
08063e0d1d117825d9dcc0c3a312b00e *man/getT-methods.Rd
17afc800a90d7c5381a954a1a5ac3c47 *man/getTimes.Rd
36f5c24491b8fe25a80a7b4cddbf27f7 *man/graph.CTMC.Rd
c3399eccabd4d68bba89cf2de1b5d056 *man/list2CTMC.Rd
b4e9bedc17702b365a58c3817a4d364f *man/num.deriv.Rd
ea5a05cb4173697ad411ff72c2750692 *man/plot-methods.Rd
c9a2f7910dd6a32d95204e7b62baeb4c *man/power.coef.one.Rd
815b5754fb4b666844525f86bb93d09b *man/process.prob.one.Rd
d4e288ddeaa439e12666227dd90dd732 *man/sampleJumpTime.Rd
ffe138394e04a804340136b9186a3e5d *man/sim.condBD.Rd
64b247da8c6e6cbc2ff4eb7b1230983f *man/simplify.Rd
68ae8b2dbf4f58d28057e9b4c0a96f7b *man/sub-methods.Rd
f9664eff37b276854c20d7ba633bbf92 *vignettes/BD_EM.Rnw
8f99ee843d8f03138075d7871186cbde *vignettes/BD_EM_wImmig.Rnw
7d773a726ab86ea49b9129eb3f9f0277 *vignettes/BD_MCMC-lambdaPlot.eps
b927da43173f45484e956fd365ee35eb *vignettes/BD_MCMC-lambdaPlot.pdf
150e9fb0e259e8b2b3b38e8bad04401c *vignettes/BD_MCMC-muPlot.eps
1a27e54bcb11d25d2c7321a78b35add5 *vignettes/BD_MCMC-muPlot.pdf
50a74f3f4bdfe77b2f2eccef99168cdd *vignettes/BD_MCMC.Rnw
d5611dcf5243bc3caeaaf1eab5995018 *vignettes/DOBADbiblio.bib
46430884616fc93ad0d3b6df639c78d8 *vignettes/Makefile
bbad1774d9987509782daa3eeeba2892 *vignettes/Rplots.pdf
abaf42761c45e33f1b894aec66c2376c *vignettes/biom.bst
0574c427b6dee89c8a34078eb620ccd1 *vignettes/sim_condBD.Rnw
