d926fc87a4ba61674876c55ff498e8e5 *CHANGES
592fe0973862c0287f0e6735fa810346 *DESCRIPTION
87cb9077045251fe526b3dc942769a89 *NAMESPACE
359754297073b46a4e9b9bef568ac672 *NEWS
5df6170f4ff2a4cf8aca920621d01db2 *R/AFM3DPrinter.R
bb25917bc5f2b848f31000840b83621f *R/AFMFractalDimensionAnalyser.R
1f1ee324c998231316f96bac35ddcef4 *R/AFMGaussianMixAnalyser.R
965c88570aae53a888d31eecc0728d2e *R/AFMImage.R
821b1987f80312127a462416ab7cb67b *R/AFMImageAnalyser.R
940220dfe14955d42f509ffc81508c83 *R/AFMNetworksAnalyser.R
c12ca2712d7e33dd6799001088102cae *R/AFMPSDAnalyser.R
0117ef49c815a4bf9ae61a9361f54c1f *R/AFMReportMaker.R
ab51333be5d2a029cb3b76c367943fc8 *R/AFMVariogramAnalyser.R
d7a7443fc081f900674b21c75c6af62e *R/pkgname.R
41c6b00dd0bb61f180a4c2f428fb1529 *R/runAFMApp.R
1cf624c372172e3932fec36c43adaca0 *data/AFMImageCollagenNetwork.rda
c23e2375ea669ad0c4f8ae518780aaa6 *data/AFMImageOfAluminiumInterface.rda
7f66a1597dc601e7eefbd89795eb598c *data/AFMImageOfNormallyDistributedHeights.rda
6e44dbbbe91a99f4f74ceb9811a8fb74 *data/AFMImageOfOnePeak.rda
a7b99d9bd0ade85798fcf46252882fee *data/AFMImageOfRegularPeaks.rda
01342af93915b8901bfac16a3c63b6cf *data/datalist
8c1f94f4ba148b2899769134c2f1f92e *inst/CITATION
96355da9db74268fddf72584b5623efc *inst/shiny/AFM-desktop/server.R
83622cb2b768378800a15125471900a3 *inst/shiny/AFM-desktop/ui.R
c076dbb9fe99391d977abf874e924f6d *inst/shiny/AFM-desktop/www/index.html
d4441a6b3f63416af832a1942909cf95 *man/AFM.Rd
486bb789272c464e256bf2d1d28e856f *man/AFMFractalDimensionAnalyser-getFractalDimensions.Rd
999c62b52569eb5c0716db4021e7aa67 *man/AFMImage-class.Rd
9f103b9ced81ba7d0c5157aded4c38f5 *man/AFMImage-extractAFMImage.Rd
fecc3061f1fde562e583221ee94364b9 *man/AFMImage-filterAFMImage.Rd
89ad333d6a7117c473d0a396cd23a085 *man/AFMImage-getHolesStatistics.Rd
dfeaff4d23641c71f3cbd5d0c2f13e49 *man/AFMImage-importFromNanoscope.Rd
f5de4d3454f4621ca45474758c1c4680 *man/AFMImage-invertBinaryAFMImage.Rd
d8d3144c57b85336a276ce6219b03892 *man/AFMImage-isBinary.Rd
a0cb9d27fa63307f25a6a1aa1b7e3b86 *man/AFMImage-makeBinaryAFMImage.Rd
d38d51abcd306815bc69e0407d22189b *man/AFMImage-multiplyHeightsAFMImage.Rd
250e3c7f5f6eae543f8098a1a5ab9b1d *man/AFMImage-sampleAFMImage.Rd
372a822052f7e229eb53a05f14f903c8 *man/AFMImage-saveOnDisk.Rd
21626d98c34eac5738277b4200cc7772 *man/AFMImage-simplifyAFMImage.Rd
905957b5cf5010325528a62b9ad37f96 *man/AFMImage3DModelAnalysis-class.Rd
e7011d05a62b19c2a8db79d05ac9c495 *man/AFMImageAnalyser-class-initialize.Rd
3c7eb36c117acc41125281b300c2ef94 *man/AFMImageAnalyser-class.Rd
ca2ffdc2ddff6f1544153237c35852e7 *man/AFMImageCollagenNetwork.Rd
d88989fb618283c9a3dfd86a23ff6c83 *man/AFMImageFractalDimensionMethod-class.Rd
337f942fb2d5162b921136a2ac69c5de *man/AFMImageFractalDimensionsAnalysis-class.Rd
0cd7143ec7739c2d2312866f6f8a6196 *man/AFMImageGaussianMixAnalysis-class.Rd
a714785e7bbbfd7544ca8df641ae863c *man/AFMImageNetworksAnalysis-class.Rd
5dc7a0ffc8d5c71c4a404d039bbe1d39 *man/AFMImageOfAluminiumInterface.Rd
d8b918bdbf0e27f84f718777ffbdd0d0 *man/AFMImageOfNormallyDistributedHeights.Rd
8e7ee54f78ded2a9ef977b8b68cf134b *man/AFMImageOfOnePeak.Rd
459c8f4a9a1d6270428ac7d0f3c46b2d *man/AFMImageOfRegularPeaks.Rd
54a8171303537bb304f3642198f2f1d0 *man/AFMImagePSDAnalysis-class.Rd
8c6c54c097fdab2a706d9629c81c04b5 *man/AFMImagePSDSlopesAnalysis-class.Rd
871adbf32463d2701eea4caa81e074c5 *man/AFMImageVariogramAnalyser-calculateDirectionalVariograms.Rd
fc9b6a8fe1a71b907e7184ed60258c3d *man/AFMImageVariogramAnalyser-calculateOmnidirectionalVariogram.Rd
a4d176461c8464b6ea6056b71437cc32 *man/AFMImageVariogramAnalyser-getAutomaticWidthForVariogramCalculation.Rd
a2e2260876feb089bf88bdf4280323c2 *man/AFMImageVariogramAnalysis-class.Rd
40b0918597a407fd987cedac5f7c6454 *man/AFMImageVariogramAnalysis-evaluateVariogramModels-method.Rd
60d1f129f40ad1b8ea224732d7c80fc7 *man/AFMImageVariogramAnalysis-getDTModelEvaluation-method.Rd
d51739577fb8320ef60121da3cf255cf *man/AFMImageVariogramAnalysis-getDTModelSillRange-method.Rd
2bad7a4c06c4e4a46dd914c0344f71dc *man/AFMImageVariogramAnalysis-updateProgress-method.Rd
7096eefabd5ca534767855ec64060731 *man/AFMImageVariogramModel-class.Rd
71170f2703dc18dc98fca4246c3ff02b *man/AFMVariogramAnalyser-getSpplotFromAFMImage.Rd
8ae71408ff32f6c0db0dac1eb12311dd *man/AFMVariogramAnalyser-saveSpplotFromAFMImage.Rd
c9140a429f17f90f38c827fefb3b6b2b *man/AreNodesConnected.Rd
818806605c5ba02a36d874ccdf5fc48a *man/PSD1DAgainstFrequency-methods.Rd
4e6f051455ae67ae77352f833de58d6c *man/PSD2DAgainstFrequency-methods.Rd
b6d1fdbfcf5394231b4b51a787187e2c *man/RoughnessByLengthScale-methods.Rd
46cee1c6d9d7e2c72589b722a4504716 *man/addNode.Rd
a29cea46cbf963bd479bffd48109b0ef *man/analyse.Rd
4ad15d9d38c9aa4e5ae0ad459b4cb110 *man/calculate3DModel-methods.Rd
c2110d0d4fe3a8d20a99dc6ad68fdf25 *man/calculateGaussianMixture.Rd
6a87bdbf9386199c50a67be599940429 *man/calculateHolesCharacteristics.Rd
4cdd05280e4242a5618cbe85bae30cc3 *man/calculateIgraph.Rd
61c2c579b26fe93fe8170312aef139f1 *man/calculateNetworkParameters.Rd
2385442d72e710d947edf8db8637faff *man/calculateNetworkSkeleton.Rd
2cee37bd547d60172b1bb584e89e1c6b *man/calculateNetworks-methods.Rd
aa07e4aeb085503fb6671129603a157c *man/calculatePhysicalDistanceFromPath.Rd
cd4961053a91f953acc4d913740c625d *man/calculateShortestPaths.Rd
200cec0ffaa53eafa050ee10da6db456 *man/canBeRemoved.Rd
2dfa12a30fd776c60375a91b9339aa1b *man/checkIsotropy.Rd
198bd04eddbd57790971dc155fbd045d *man/checkNormality.Rd
46f565179aa7dfdbc8c8999d8350589a *man/createGraph.Rd
d4568a89321089d8b4ca9fb371b2d44c *man/displayColoredNetworkWithVerticesSize.Rd
5bd0b0c95aacaf55fc9d21f15061c896 *man/displayHolesIn3D.Rd
636c945c903cc05f91d2f483e981405a *man/displayIn3D.Rd
5d54e4c6703847fce49669dd0ffc81b3 *man/displaygridIgraphPlot.Rd
33d636c80253dc94fe10af0fae66ffca *man/displaygridIgraphPlotFromEdges.Rd
5cc658eb75b5c4eb05a9fcc4d6ae0980 *man/dnormalmix.Rd
7eac46fb4d83618a33b27f8e7c2c6c70 *man/existsEdge.Rd
f5b0d9a08397e66170f69c5d85082ab5 *man/existsSegment.Rd
92d7637b0b222f676d5702d8cd07651a *man/exportToSTL.Rd
28d4827193ea4b749adf396c97653879 *man/fusionCloseNodes.Rd
5808995d741eef94ed7085ce44f5288b *man/generateAFMImageReport.Rd
ca6a42d531136efb47f8cebed873c172 *man/generateCheckReport.Rd
5058d28c71cbb4d82f823bc5b91de3f6 *man/generatePolygonEnvelope.Rd
b45010be009cc991112dfbd6ccc538b8 *man/generateReport.Rd
3546032f178833cf60fdf6773fe7a0e7 *man/generateReportFromNanoscopeImageDirectory.Rd
d2d1cc135d107b4aa2e9fb4d7cc2a21a *man/get3DImageFullfilename.Rd
b0027d5b9831fd5d2fd5ae20952d4eca *man/getAllPointsToRemove.Rd
7b0462bf4b096850c6252be609aeb492 *man/getAngle.Rd
684282ce3098d7a864da5e8c889d39bb *man/getAutoIntersectionForOmnidirectionalVariogram.Rd
c34396f9645c91fbc04d6054595070bf *man/getAutoIntersectionForRoughnessAgainstLengthscale.Rd
884acedcf443294fe901b9902e060876 *man/getBresenham2DSegment.Rd
284ce0c2831f34cdf41575e746e6ad5b *man/getCircleSpatialPoints.Rd
34124e569b750c4d41c3fbb209ac7c87 *man/getCoordinatesFromVertexId.Rd
0b57a6bcc51eef5c486913255575cf64 *man/getIntersectionForRoughnessAgainstLengthscale.Rd
bd7e2f57f3e22b57598e7be144cca1fe *man/getIntersectionPointWithBorder.Rd
95ff2a1213d853c591a00cd7c7b8279d *man/getListOfDiameters.Rd
dcf92fb529bd23bd2aab9b584a9071e8 *man/getLogLogOmnidirectionalSlopeGraph.Rd
fcc1a1a076c6f2472ac2bcbf570c069b *man/getMaxCircleMatrix.Rd
62070cc7f0a046e7c6343a8ac86be5d3 *man/getNetworkGridLayout.Rd
cf29da7094136448de5a75ec8004104c *man/getNetworkParameters-methods.Rd
01e4459495f89410a75b7869daea88ff *man/getNyquistSpatialFrequency-methods.Rd
dc6fc88865334e380e38664c412517d3 *man/getPaddedAFMImage.Rd
6ff3d20a5f94ee707ed2a8062c5ae08e *man/getRoughnessParameters-methods.Rd
ef1948f9dad5130e6313f1bcd4d084dc *man/getSurroundingVertexesList.Rd
571c84780b255eb8b861751081dfc589 *man/getTopologyAFMImage.Rd
0d3bf2dc7f2d73392e21ae7538bf068e *man/getTriangle.Rd
42fe9dde526a908d61ae0d4eea882730 *man/getVertexId.Rd
008b6147affa1aa600d96d31f70357aa *man/gridIgraphPlot.Rd
25e9cff2290c061ba8455afe138446d8 *man/identifyEdgesFromCircles.Rd
cdf4969814e3fddfee2d740921e51443 *man/identifyIsolatedNodes.Rd
1f0e2cfbf9074a97a1c535c7125bd87f *man/identifyMaxCircleRadius.Rd
eb4779546b0a5b56b02b0a71d0d3b365 *man/identifyNodesAndEdges.Rd
a65c3106c6a92f7bdb9dd46e4cfde6cc *man/identifyNodesWithCircles.Rd
f4a4c60dd6501766ba7d0abdfdc7c07a *man/isAdjacentToBetterVertex.Rd
04a6ab86638c67b5bbcfd6b72ee542cb *man/isAngleBetweenEdgesAlwaysSuperiorToMinAngle.Rd
d94d99c12f8160a26b6b97a5b1a8615c *man/loglike.normalmix.Rd
81cdf99a1314c24e576533d624cd6792 *man/omniVariogramSlopeAnalysis-class.Rd
5cc72078668dd6eefc33dda49d9546d5 *man/performAllPSDCalculation.Rd
f73f0afc8cccab168b3bfff59ef6ced0 *man/performGaussianMixCalculation.Rd
3e6767b05bd42de599c7ae45b7e0e0a6 *man/pnormmix.Rd
5b3d9ae0c23e9a6ad69846244eb39a01 *man/printVariogramModelEvaluations.Rd
cd60a92361a5a238c934f3b3f852c820 *man/putAnalysisOnDisk-methods.Rd
9d83e1d72ab3d3ac0daceafe5f22c6d1 *man/putImagesFromAnalysisOnDisk.Rd
3dca2163846096c25beb30ac2cbccdb3 *man/removeLonguestEdge.Rd
c8ad1a9d8a2230fbe3c3f061550a954a *man/removeNode.Rd
36483ff795ba05b52b67338610863dd7 *man/runAFMApp.Rd
b63d1c55e3e6ecf741e194b5a9e11b05 *man/saveOnDiskIntersectionForRoughnessAgainstLengthscale.Rd
9f63966f582bbfec409b96a01f5db05c *man/shiftFFT2D.Rd
0656c32ce3372adde3942bccaffeaab4 *man/shiftedPSDuv.Rd
e575d9e15eea865b95b83dbdae73f010 *man/simplifyNetwork.Rd
9f0b06c4edd5d669d01894633fdb214e *man/thinImage.Rd
469c8baaec21b758f5ba934963bdd805 *man/totalRMSRoughness.Rd
512530771f4dc09a3990985c3fd1f41d *man/transformAFMImageForNetworkAnalysis-methods.Rd
6111964539ac4dc79bdb38861e80534d *tests/testthat/configuration.R
51d63f3c8c8eda086be81244a6459ce9 *tests/testthat/testAFMImageGaussianMix.R
b0779072fdb07cdefaec1ae80510f70a *tests/testthat/testAFMImageGaussianMixesExport.R
6330e1da62a19d6a08e67250e0f19dd5 *tests/testthat/testAFMImageNetworkAnalyser.R
50c3442001d0c8945ad8d115becde917 *tests/testthat/testAFMReportMaker.R
