2006-03-07 16:22  nj7w

	* trunk/gplots/data/rtPCR.rda: Replaced the corrupted rtPCR.rda
	  file in data directory

2006-03-07 16:14  nj7w

	* trunk/gplots/tests: Removed the corrputed tests directory

2006-03-07 16:12  nj7w

	* trunk/gplots/data/rtPCR.rda, trunk/gplots/rtPCR.rda: Replaced
	  the corrupted rtPCR.rda file in data directory

2006-03-03 21:03  nj7w

	* trunk/gplots/R/heatmap.2.R, trunk/gplots/man/heatmap.2.Rd:
	  Updated the code and man page to make sure the Rowv and Colv
	  values are properly handled

2006-03-02 21:43  warnes

	* trunk/gplots/R/balloonplot.R: Adjust row total placement to
	  adjust for width of the totals

2006-03-02 21:26  warnes

	* trunk/gplots/DESCRIPTION, trunk/gplots/R/balloonplot.R,
	  trunk/gplots/man/1: Row totals in ballonplot were in reverse
	  order. Fixed.

2006-02-23 22:00  nj7w

	* trunk/gplots/R/heatmap.2.R, trunk/gplots/tests/heatmap2Test.R:
	  Add ability to scale the color key using the new 'keysize'
	  argument.

2006-02-23 21:34  nj7w

	* trunk/gplots/tests, trunk/gplots/tests/heatmap2Test.R,
	  trunk/gplots/tests/heatmap2Test.Rout.save: Add tests for
	  heatmap.2

2006-02-23 21:25  nj7w

	* trunk/gplots/inst/doc/Figure1.eps,
	  trunk/gplots/inst/doc/Table.eps, trunk/gplots/inst/doc/bka.bst,
	  trunk/gplots/inst/doc/heatmap2.R,
	  trunk/gplots/inst/doc/heatmap2.tex,
	  trunk/gplots/inst/doc/regression_rank_image.Rda,
	  trunk/gplots/inst/doc/regression_rank_image_II.Rda: Move heatmap
	  and ballonplot paper source materials to their respective cvs
	  modules

2006-02-23 21:20  nj7w

	* trunk/gplots/inst/doc/BalloonPlot.R,
	  trunk/gplots/inst/doc/BalloonPlot.tex,
	  trunk/gplots/inst/doc/Figure1.pdf,
	  trunk/gplots/inst/doc/Figure2.pdf,
	  trunk/gplots/inst/doc/Figure3.pdf,
	  trunk/gplots/inst/doc/Figure4.pdf,
	  trunk/gplots/inst/doc/Rnews.sty,
	  trunk/gplots/inst/doc/SurvivedPop.pdf,
	  trunk/gplots/inst/doc/SurvivedPopWhite.pdf,
	  trunk/gplots/inst/doc/SurvivedProp.pdf,
	  trunk/gplots/inst/doc/TotalPop.pdf: Moved balloonplot paper
	  materials to BallonPlotPaper cvs module

2006-02-23 21:18  nj7w

	* trunk/gplots/inst/doc/colSeparator.pdf,
	  trunk/gplots/inst/doc/logData.pdf,
	  trunk/gplots/inst/doc/logDataColDendrogram.pdf,
	  trunk/gplots/inst/doc/logDataColOrd.pdf,
	  trunk/gplots/inst/doc/logDataColOrdNo.pdf,
	  trunk/gplots/inst/doc/logDataRowDendrogram.pdf,
	  trunk/gplots/inst/doc/origScale.pdf,
	  trunk/gplots/inst/doc/rowSeparator.pdf,
	  trunk/gplots/inst/doc/scaled.pdf: Remove heatmap paper files and
	  move them to the HeatmapPaper cvs module.

2006-02-23 19:57  nj7w

	* trunk/gplots/inst/doc/colSeparator.pdf,
	  trunk/gplots/inst/doc/logData.pdf,
	  trunk/gplots/inst/doc/logDataColDendrogram.pdf,
	  trunk/gplots/inst/doc/logDataColOrd.pdf,
	  trunk/gplots/inst/doc/logDataColOrdNo.pdf,
	  trunk/gplots/inst/doc/logDataRowDendrogram.pdf,
	  trunk/gplots/inst/doc/origScale.pdf,
	  trunk/gplots/inst/doc/rowSeparator.pdf,
	  trunk/gplots/inst/doc/scaled.pdf: Added figures for heatmap2
	  paper

2006-02-23 19:54  nj7w

	* trunk/gplots/inst/doc/regression_rank_image.Rda,
	  trunk/gplots/inst/doc/regression_rank_image_II.Rda: Added the
	  .Rda files for the heatmap2 paper

2006-02-23 19:52  nj7w

	* trunk/gplots/inst/doc/heatmap2.tex: Added the source - (tex
	  file) of the heatmap paper

2006-02-23 19:51  nj7w

	* trunk/gplots/inst/doc/heatmap2.R: Added the code for the figures
	  of heatmap paper

2006-02-21 22:19  nj7w

	* trunk/gplots/R/heatmap.2.R, trunk/gplots/man/heatmap.2.Rd: Minor
	  updates to heatmap.2 - fixed Rowv, Colv and dendrogram
	  behaviour. Now Rowv=NULL or FALSE both imply no dendrogram
	  computation.

2006-01-12 23:10  warnes

	* trunk/gplots/inst/doc/BalloonPlot.R,
	  trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/inst/doc/BalloonPlot.tex,
	  trunk/gplots/inst/doc/Figure1.pdf,
	  trunk/gplots/inst/doc/Figure2.pdf,
	  trunk/gplots/inst/doc/Figure3.pdf,
	  trunk/gplots/inst/doc/Figure4.pdf: more updates

2006-01-12 23:01  warnes

	* trunk/gplots/inst/doc/bka.bst: Add Biometrica bibliography style
	  file

2006-01-12 22:34  warnes

	* trunk/gplots/inst/doc/BalloonPlot.tex: A little more.

2006-01-12 22:32  warnes

	* trunk/gplots/inst/doc/BalloonPlot.tex: Updates to respond to
	  referee.

2006-01-12 19:59  nj7w

	* trunk/gplots/inst/doc/BalloonPlot.tex: Added references

2005-12-13 17:01  nj7w

	* trunk/gplots/inst/doc/BalloonPlot.tex: Fixed Nitin's company name

2005-12-13 16:18  nj7w

	* trunk/gplots/ChangeLog, trunk/gplots/NEWS, trunk/gtools/NEWS:
	  Updated NEWS and removed ChangeLog

2005-12-12 22:20  nj7w

	* trunk/gplots/R/plotmeans.R: Fixed bug in plotmeans - based on
	  Stefano Calza's suggestion

2005-12-07 18:52  nj7w

	* trunk/gplots/DESCRIPTION: Updated version number

2005-12-07 18:50  nj7w

	* trunk/gplots/NAMESPACE, trunk/gplots/R/plot.lm.R,
	  trunk/gplots/man/plot.lm2.Rd: Added plot.lm

2005-12-07 18:48  nj7w

	* trunk/gplots/man/barplot2.Rd: Changed the default grey colors to
	  heat colors, if height is matrix
	* trunk/gplots/R/barplot2.R: Changed the default greay colors to
	  heat colors, if height is matrix

2005-12-06 22:41  nj7w

	* trunk/gplots/man/barplot2.Rd: Fixed minor error in documentation
	  of barplot2

2005-12-02 21:11  warnes

	* trunk/gplots/R/plot.lm.R: Remove .Alias calls, since .Alias is
	  defunct.

2005-12-01 16:54  nj7w

	* trunk/gmodels/man/ci.Rd, trunk/gmodels/man/coefFrame.Rd,
	  trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/fit.contrast.Rd,
	  trunk/gmodels/man/make.contrasts.Rd,
	  trunk/gplots/man/balloonplot.Rd, trunk/gplots/man/bandplot.Rd,
	  trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/colorpanel.Rd,
	  trunk/gplots/man/overplot.Rd, trunk/gplots/man/plotmeans.Rd,
	  trunk/gplots/man/textplot.Rd, trunk/gplots/man/wapply.Rd,
	  trunk/gtools/man/combinations.Rd,
	  trunk/gtools/man/foldchange.Rd, trunk/gtools/man/invalid.Rd,
	  trunk/gtools/man/logit.Rd, trunk/gtools/man/mixedsort.Rd,
	  trunk/gtools/man/oddeven.Rd, trunk/gtools/man/quantcut.Rd,
	  trunk/gtools/man/running.Rd: Updated Greg's email address

2005-11-23 22:05  nj7w

	* trunk/gplots/inst/doc/BalloonPlot.R,
	  trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/inst/doc/BalloonPlot.tex,
	  trunk/gplots/inst/doc/Figure2.pdf: Updated Figure 2 colors

2005-11-18 20:40  warnes

	* trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/inst/doc/Figure1.pdf,
	  trunk/gplots/inst/doc/Figure2.pdf,
	  trunk/gplots/inst/doc/Figure3.pdf,
	  trunk/gplots/inst/doc/Figure4.pdf: Latest version of the pdf
	  files

2005-11-18 20:37  warnes

	* trunk/gplots/inst/doc/BalloonPlot.tex: Nitin works for the
	  Cambrige Group, not Pfizer.

2005-11-18 20:34  warnes

	* trunk/gplots/inst/doc/BalloonPlot.tex: Minor text rewording.

2005-11-18 20:31  warnes

	* trunk/gplots/inst/doc/BalloonPlot.R,
	  trunk/gplots/inst/doc/BalloonPlot.tex: More edits.

2005-11-18 19:50  warnes

	* trunk/gplots/R/balloonplot.R: Recent changes to align row totals
	  with the overall total broke how
	  the marginal cumulative fractions were displayed. This patch
	  fixes
	  the problem.

2005-11-18 01:17  warnes

	* trunk/gplots/DESCRIPTION, trunk/gplots/R/balloonplot.R,
	  trunk/gplots/R/plot.lm.R, trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/man/balloonplot.Rd: - Update documentation for
	  balloonplot to match the latest code.
	  - Correct spelling of 'show.zeroes' to 'show.zeros'

2005-11-18 00:16  warnes

	* trunk/gplots/R/colorpanel.R: More changes: colorpanel now allows
	  only 2 colors to be specified if
	  no 'middle' color is desired.

2005-11-17 22:08  warnes

	* trunk/gplots/R/balloonplot.R: Allow user to control removal of
	  duplicate entries in balloonplot.

2005-11-17 22:06  warnes

	* trunk/gplots/R/colorpanel.R, trunk/gplots/man/colorpanel.Rd:
	  Extend colorpanel to handle just two-colors in addition to three.

2005-11-09 22:39  nj7w

	* trunk/gplots/inst/doc/BalloonPlot.pdf: Updated the pdf file

2005-11-09 22:38  nj7w

	* trunk/gplots/inst/doc/BalloonPlot.R,
	  trunk/gplots/inst/doc/BalloonPlot.tex: Updated the changes

2005-11-09 22:29  nj7w

	* trunk/gplots/inst/doc/Figure4.pdf: Modified figure 4
	* trunk/gplots/inst/doc/BalloonPlot.R: Updated code

2005-11-09 22:20  nj7w

	* trunk/gplots/inst/doc/Figure3.pdf: Modified figure 3
	* trunk/gplots/inst/doc/Figure2.pdf: Modified figure 2

2005-11-09 22:19  nj7w

	* trunk/gplots/inst/doc/Figure1.pdf: Modified figure 1

2005-11-08 16:19  nj7w

	* trunk/gplots/man/plotCI.Rd: Updated Greg's email

2005-11-07 16:58  nj7w

	* trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/inst/doc/BalloonPlot.tex: Minor modifications to
	  fit the code properly on pdf

2005-11-07 14:22  warnes

	* trunk/gplots/inst/doc/BalloonPlot.R: Add R code that generates
	  plots

2005-11-07 14:18  warnes

	* trunk/gplots/inst/doc/Figure2.pdf,
	  trunk/gplots/inst/doc/Figure3.pdf,
	  trunk/gplots/inst/doc/Figure4.pdf: Add figures to CVS
	* trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/inst/doc/BalloonPlot.tex,
	  trunk/gplots/inst/doc/Figure1.pdf: Text changes

2005-11-04 21:48  warnes

	* trunk/gplots/R/balloonplot.R: Fix some alignment issues.

2005-11-04 19:05  warnes

	* trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/inst/doc/Table.pdf: Remove Table.pdf since it is no
	  longer needed

2005-11-04 19:04  warnes

	* trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/inst/doc/BalloonPlot.tex,
	  trunk/gplots/inst/doc/Figure1.pdf: Nitin's Changes

2005-11-04 19:00  warnes

	* trunk/gplots/inst/doc/SurvivedPop.pdf,
	  trunk/gplots/inst/doc/SurvivedPopWhite.pdf,
	  trunk/gplots/inst/doc/SurvivedProp.pdf,
	  trunk/gplots/inst/doc/TotalPop.pdf: Add figure plots

2005-11-04 18:59  warnes

	* trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/inst/doc/BalloonPlot.tex: Fix paths

2005-10-20 18:36  nj7w

	* trunk/gplots/inst/doc/Figure1.eps,
	  trunk/gplots/inst/doc/Table.eps: added the eps version of figures

2005-10-20 18:35  nj7w

	* trunk/gplots/inst/doc/BalloonPlot.pdf: Updated BallonPlot.pdf

2005-10-20 18:34  nj7w

	* trunk/gplots/inst/doc/SurvivedPop.pdf,
	  trunk/gplots/inst/doc/SurvivedPopWhite.pdf,
	  trunk/gplots/inst/doc/SurvivedProp.pdf,
	  trunk/gplots/inst/doc/TotalPop.pdf: Removed Old Figure

2005-10-20 18:31  nj7w

	* trunk/gplots/inst/doc/Figure1.pdf,
	  trunk/gplots/inst/doc/Table.pdf: Added the new figure - for
	  total popluation - Balloonplot

2005-10-20 18:29  nj7w

	* trunk/gplots/inst/doc/BalloonPlot.tex: Modified the BallonPlot
	  article

2005-10-20 14:12  nj7w

	* trunk/gplots/inst/doc/BalloonPlot.tex: Added references

2005-10-19 16:57  arnima

	* trunk/gplots/man/rich.color.Rd: The last example now displays
	  the correct heat.colors.
	  Default 'palette' argument is now a single string, not a vector.

2005-10-19 16:56  arnima

	* trunk/gplots/R/rich.color.R: Default 'palette' argument is now a
	  single string, not a vector.

2005-10-14 19:13  warnes

	* trunk/gplots/DESCRIPTION, trunk/gplots/R/balloonplot.R,
	  trunk/gplots/man/balloonplot.Rd: Formatting fixes:
	  - Handle multiple row or column category variables
	  - Separate rows/columns of category labels by lines
	  - Fix handling of 'cumsum' plots on row/column labels
	  - Improve display of row/column sums

2005-10-13 20:00  warnes

	* trunk/gplots/man/balloonplot.Rd: Add example using Titanic data
	  that exercises the multi-factor
	  display.

2005-10-11 21:20  warnes

	* trunk/gplots/R/balloonplot.R: Initial changes to allow multiple
	  x and y factor variables. Yet to
	  be done: 1) remove extra 'boxes'. 2) omit duplicated values

2005-10-04 19:39  warnes

	* trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/inst/doc/BalloonPlot.tex: more minor fixes

2005-10-04 19:29  warnes

	* trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/inst/doc/BalloonPlot.tex: fix spacing

2005-10-04 19:08  warnes

	* trunk/gplots/inst/doc/Rnews.sty: Inlcude Rnews.sty

2005-10-04 19:07  warnes

	* trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/inst/doc/BalloonPlot.tex: Some textual edits.

2005-10-03 16:23  nj7w

	* trunk/gplots/inst/doc/SurvivedPop.pdf,
	  trunk/gplots/inst/doc/SurvivedPopWhite.pdf,
	  trunk/gplots/inst/doc/SurvivedProp.pdf,
	  trunk/gplots/inst/doc/TotalPop.pdf: Added figures for the R-News
	  Article

2005-09-29 21:02  nj7w

	* trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/inst/doc/BalloonPlot.tex: Updated the documentation
	  - added the name of the person who asked the question

2005-09-29 20:29  nj7w

	* trunk/gplots/inst, trunk/gplots/inst/doc,
	  trunk/gplots/inst/doc/BalloonPlot.pdf,
	  trunk/gplots/inst/doc/BalloonPlot.tex: Added R-news article

2005-09-12 15:44  nj7w

	* trunk/gdata/man/aggregate.table.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/matchcols.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/read.xls.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/trim.Rd,
	  trunk/gdata/man/unmatrix.Rd, trunk/gmodels/man/fast.prcomp.Rd,
	  trunk/gmodels/man/glh.test.Rd, trunk/gplots/man/hist2d.Rd,
	  trunk/gplots/man/ooplot.Rd, trunk/gplots/man/residplot.Rd,
	  trunk/gplots/man/sinkplot.Rd, trunk/gplots/man/smartlegend.Rd,
	  trunk/gplots/man/space.Rd, trunk/gtools/man/assert.Rd,
	  trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/permute.Rd,
	  trunk/gtools/man/scat.Rd: Updated Greg's email

2005-09-12 14:45  nj7w

	* trunk/gplots/R/balloonplot.R: Updated version of balloonplot -
	  by Romain Francois <francoisromain@free.fr>

2005-09-09 20:34  nj7w

	* trunk/gplots/ChangeLog, trunk/gplots/DESCRIPTION: Updated the
	  version and ChangeLog

2005-09-09 20:32  nj7w

	* trunk/gplots/R/balloonplot.R, trunk/gplots/man/balloonplot.Rd:
	  Changes in ballon plot based on Romain Francois
	  (francoisromain@free.fr) suggestions

2005-09-06 21:41  nj7w

	* trunk/gplots/DESCRIPTION: Updated package dependencies
	* trunk/gplots/NEWS: Added NEWS

2005-09-02 23:10  nj7w

	* trunk/gmodels/ChangeLog, trunk/gplots/ChangeLog: Added ChangeLog

2005-08-31 16:28  nj7w

	* trunk/gdata/DESCRIPTION, trunk/gmodels/DESCRIPTION,
	  trunk/gplots/DESCRIPTION: Added DESCRIPTION file

2005-08-31 16:27  nj7w

	* trunk/gdata/DESCRIPTION.in, trunk/gmodels/DESCRIPTION.in,
	  trunk/gplots/DESCRIPTION.in: removed DESCRIPTION.in

2005-06-09 14:20  nj7w

	* trunk/gdata/R/Args.R, trunk/gdata/R/aggregate.table.R,
	  trunk/gdata/R/combine.R, trunk/gdata/R/elem.R,
	  trunk/gdata/R/env.R, trunk/gdata/R/frameApply.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R,
	  trunk/gdata/R/keep.R, trunk/gdata/R/ll.R,
	  trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R,
	  trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R,
	  trunk/gdata/R/unmatrix.R,
	  trunk/gdata/inst/perl/IO/AtomicFile.pm,
	  trunk/gdata/inst/perl/IO/InnerFile.pm,
	  trunk/gdata/inst/perl/IO/Lines.pm,
	  trunk/gdata/inst/perl/IO/Scalar.pm,
	  trunk/gdata/inst/perl/IO/Scalar.pm.html,
	  trunk/gdata/inst/perl/IO/ScalarArray.pm,
	  trunk/gdata/inst/perl/IO/Stringy.pm,
	  trunk/gdata/inst/perl/IO/Wrap.pm,
	  trunk/gdata/inst/perl/IO/WrapTie.pm,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/drop.levels.Rd, trunk/gdata/man/interleave.Rd,
	  trunk/gdata/man/nobs.Rd, trunk/gdata/man/rename.vars.Rd,
	  trunk/gdata/man/reorder.Rd, trunk/gmodels/R/ci.R,
	  trunk/gmodels/R/coefFrame.R, trunk/gmodels/R/estimable.R,
	  trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
	  trunk/gmodels/man/CrossTable.Rd, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/coefFrame.Rd, trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/fast.prcomp.Rd,
	  trunk/gmodels/man/fit.contrast.Rd,
	  trunk/gmodels/man/glh.test.Rd,
	  trunk/gmodels/man/make.contrasts.Rd,
	  trunk/gplots/R/balloonplot.R, trunk/gplots/R/bandplot.R,
	  trunk/gplots/R/boxplot.n.R, trunk/gplots/R/colorpanel.R,
	  trunk/gplots/R/heatmap.2.R, trunk/gplots/R/hist2d.R,
	  trunk/gplots/R/lowess.R, trunk/gplots/R/ooplot.R,
	  trunk/gplots/R/overplot.R, trunk/gplots/R/plotCI.R,
	  trunk/gplots/R/plotmeans.R, trunk/gplots/R/qqnorm.aov.R,
	  trunk/gplots/R/residplot.R, trunk/gplots/R/rich.color.R,
	  trunk/gplots/R/sinkplot.R, trunk/gplots/R/smartlegend.R,
	  trunk/gplots/R/space.R, trunk/gplots/R/textplot.R,
	  trunk/gplots/R/wapply.R, trunk/gplots/man/1,
	  trunk/gplots/man/bandplot.Rd, trunk/gplots/man/barplot2.Rd,
	  trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/hist2d.Rd,
	  trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd,
	  trunk/gplots/man/plotmeans.Rd, trunk/gplots/man/residplot.Rd,
	  trunk/gplots/man/space.Rd, trunk/gplots/man/wapply.Rd,
	  trunk/gtools/R/RSCompat.S, trunk/gtools/R/combinations.R,
	  trunk/gtools/R/dirichlet.R, trunk/gtools/R/foldchange.R,
	  trunk/gtools/R/invalid.R, trunk/gtools/R/logit.R,
	  trunk/gtools/R/mixedsort.R, trunk/gtools/R/oddeven.R,
	  trunk/gtools/R/permute.R, trunk/gtools/R/quantcut.R,
	  trunk/gtools/R/running.R, trunk/gtools/R/scat.R,
	  trunk/gtools/man/ELISA.Rd, trunk/gtools/man/combinations.Rd,
	  trunk/gtools/man/dirichlet.Rd, trunk/gtools/man/foldchange.Rd,
	  trunk/gtools/man/invalid.Rd, trunk/gtools/man/logit.Rd,
	  trunk/gtools/man/mixedsort.Rd, trunk/gtools/man/oddeven.Rd,
	  trunk/gtools/man/permute.Rd, trunk/gtools/man/quantcut.Rd,
	  trunk/gtools/man/running.Rd, trunk/gtools/man/scat.Rd: Updating
	  the version number, and various help files to synchronize
	  splitting of gregmisc bundle in 4 individual components.

2005-06-09 14:15  nj7w

	* trunk/gplots/R/barplot2.R: Changes based on Marc Schwartz's
	  suggestions to handel 0's and NA's appropriately.

2005-05-13 18:59  nj7w

	* trunk/gdata/R/read.xls.R, trunk/gmodels/man/CrossTable.Rd,
	  trunk/gplots/man/heatmap.2.Rd: 1) Using dQuote.ascii function in
	  read.xls as the new version of dQuote doesn't work proprly with
	  UTF-8 locale.
	  2) Modified CrossTable.Rd usage in gmodels
	  3) Modified heatmap.2 usage in gplots.

2005-04-04 14:23  warnes

	* trunk/gplots/R/overplot.R: Explicitly reference package
	  containing lowess.formula in
	  panel.overplot(). This should fix the error reported by Troels
	  Ring
	  <tring@gvdnet.dk>.

2005-02-26 01:15  nj7w

	* trunk/gdata/NAMESPACE, trunk/gdata/man/elem.Rd,
	  trunk/gdata/man/env.Rd, trunk/gdata/man/ll.Rd,
	  trunk/gdata/man/read.xls.Rd, trunk/gplots/R/heatmap.2.R,
	  trunk/gplots/man/heatmap.2.Rd, trunk/gplots/man/rich.color.Rd,
	  trunk/gplots/man/sinkplot.Rd, trunk/gplots/man/textplot.Rd: ***
	  empty log message ***

2005-02-25 23:22  warnes

	* trunk/gdata/R/elem.R, trunk/gdata/R/env.R, trunk/gdata/R/ll.R,
	  trunk/gdata/man/Args.Rd, trunk/gdata/man/env.Rd,
	  trunk/gdata/man/ll.Rd, trunk/gplots/man/rich.color.Rd: Integrate
	  changes submitted by Arni Magnusson

2005-02-25 22:31  warnes

	* trunk/gplots/NAMESPACE: Add dependency imports from 'stats'
	  package.

2005-02-22 21:01  warnes

	* trunk/gplots/R/bandplot.R: Fix problem in passing graphical
	  parameters (xlim,etc).@

2005-02-08 16:41  warnes

	* trunk/gplots/DESCRIPTION.in: Improve package title.

2005-02-08 16:40  warnes

	* trunk/gplots/R/heatmap.2.R: Ignore missing values when computing
	  symmetric range.

2005-02-02 19:25  warnes

	* trunk/gplots/man/plotmeans.Rd: Add more extensive example.

2005-01-14 19:05  warnes

	* trunk/gplots/R/textplot.R: Code can be simplified because R now
	  supports selecting a fixed width font.

2005-01-12 20:50  warnes

	* trunk/gdata/DESCRIPTION.in, trunk/gmodels/DESCRIPTION.in,
	  trunk/gplots/DESCRIPTION.in, trunk/gtools/DESCRIPTION.in: Add
	  dependency on R 1.9.0+ to prevent poeple from installing on old
	  versions of R which don't support namespaces.

2004-11-30 01:06  warnes

	* trunk/gplots/R/heatmap.2.R, trunk/gplots/man/heatmap.2.Rd: 1.
	  Add new parameters for controlling color key:
	  - If `symkey==TRUE', the color key will be made symmetric about
	  0.
	  - The `densadj' parameter can be used to modify the smoother
	  width
	  (see the `adjust' parameter under `help(density)') for the
	  density
	  plotted in the key.
	  
	  2. Fix handling of rowsep/colsep.
	  
	  3. Vector of length 2 giving the width (colsep) or height
	  (rowsep) the separator box
	  drawn by colsep and rowsep as a function of the width
	  (colsep) or
	  height (rowsep) of a cell.
	  
	  4. Appropriate changes to the corresponding help page, plus some
	  minor formatting changes.

2004-11-03 19:43  warnes

	* trunk/gplots/R/heatmap.2.R: Fix bugs in layout of cell notes.
	  They were being plotted top down
	  rather than bottom up. Further reordering of the x matrix didn't
	  also reorder the notes. Both issues should now be resolved.

2004-09-27 21:01  warneg

	* trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory,
	  trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
	  trunk/gplots/DESCRIPTION, trunk/gplots/DESCRIPTION.in,
	  trunk/gplots/man/sinkplot.Rd, trunk/gplots/man/textplot.Rd,
	  trunk/gregmisc/.Rhistory, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/DESCRIPTION, trunk/gtools/DESCRIPTION.in,
	  trunk/gtools/man/running.Rd: Updated to pass R CMD check.

2004-09-03 22:50  warneg

	* trunk/gplots/man/textplot.Rd: Provide explicit package for call
	  to nobs.
	* trunk/gplots/man/heatmap.2.Rd: Fix typos.

2004-09-03 17:27  warneg

	* trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/R/Args.R,
	  trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R,
	  trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/is.what.R,
	  trunk/gdata/R/keep.R, trunk/gdata/R/ll.R,
	  trunk/gdata/R/matchcols.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/R/read.xls.R, trunk/gdata/R/rename.vars.R,
	  trunk/gdata/R/reorder.R, trunk/gdata/R/trim.R,
	  trunk/gdata/man/reorder.Rd, trunk/gmodels/DESCRIPTION,
	  trunk/gmodels/NAMESPACE, trunk/gmodels/R/CrossTable.R,
	  trunk/gmodels/R/ci.R, trunk/gmodels/R/estimable.R,
	  trunk/gmodels/R/fast.prcomp.R, trunk/gmodels/R/fit.contrast.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/R/make.contrasts.R,
	  trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/fit.contrast.Rd,
	  trunk/gmodels/man/glh.test.Rd,
	  trunk/gmodels/man/make.contrasts.Rd, trunk/gplots/DESCRIPTION,
	  trunk/gplots/NAMESPACE, trunk/gplots/R/balloonplot.R,
	  trunk/gplots/R/bandplot.R, trunk/gplots/R/barplot2.R,
	  trunk/gplots/R/boxplot.n.R, trunk/gplots/R/colorpanel.R,
	  trunk/gplots/R/heatmap.2.R, trunk/gplots/R/hist2d.R,
	  trunk/gplots/R/lowess.R, trunk/gplots/R/ooplot.R,
	  trunk/gplots/R/overplot.R, trunk/gplots/R/plotCI.R,
	  trunk/gplots/R/plotmeans.R, trunk/gplots/R/qqnorm.aov.R,
	  trunk/gplots/R/residplot.R, trunk/gplots/R/rich.color.R,
	  trunk/gplots/R/sinkplot.R, trunk/gplots/R/smartlegend.R,
	  trunk/gplots/R/space.R, trunk/gplots/R/textplot.R,
	  trunk/gplots/R/wapply.R, trunk/gtools/DESCRIPTION,
	  trunk/gtools/NAMESPACE, trunk/gtools/R/dirichlet.R,
	  trunk/gtools/R/foldchange.R, trunk/gtools/R/invalid.R,
	  trunk/gtools/R/mixedsort.R, trunk/gtools/R/oddeven.R,
	  trunk/gtools/R/permute.R, trunk/gtools/R/quantcut.R,
	  trunk/gtools/R/running.R, trunk/gtools/man/running.Rd: initial
	  bundle checkin

2004-09-02 17:14  warneg

	* trunk/gdata/DESCRIPTION, trunk/gdata/DESCRIPTION.in,
	  trunk/gdata/NAMESPACE, trunk/gdata/man/.Rhistory,
	  trunk/gmodels/DESCRIPTION, trunk/gmodels/DESCRIPTION.in,
	  trunk/gmodels/NAMESPACE, trunk/gplots/DESCRIPTION,
	  trunk/gplots/DESCRIPTION.in, trunk/gplots/NAMESPACE,
	  trunk/gplots/man/1, trunk/gplots/man/residplot.Rd,
	  trunk/gregmisc/.Rhistory, trunk/gtools/DESCRIPTION,
	  trunk/gtools/DESCRIPTION.in, trunk/gtools/NAMESPACE: Initial
	  revision

2004-07-29 14:49  warnes

	* trunk/gplots/R/plotCI.R, trunk/gplots/man/plotCI.Rd: Integrate
	  changes from the version of plotCI maintained by Martin Maechler.

2004-06-30 19:32  warnes

	* trunk/gplots/R/textplot.R: Remove commented-out code.

2004-06-30 19:26  warnes

	* trunk/gplots/R/textplot.R: Fixed text size calculations

2004-06-28 20:16  warnes

	* trunk/gplots/R/barplot2.R, trunk/gplots/man/barplot2.Rd: -
	  Default 2-d color set to grey as in (v2.0.0) r-devel
	  - The default (v1.9.1) barplot method now handles vectors and
	  1-d arrays
	  (e.g., obtained by table()) the same, and uses grey instead of
	  heat color palettes in these cases. (Also fixes PR#6776.)
	  - Updated to reflect the addition of 'offset' argument in base
	  - Fix bug in stacked barplots, which would not be plotted
	  properly

2004-06-24 16:57  warnes

	* trunk/gplots/R/heatmap.2.R, trunk/gplots/man/heatmap.2.Rd: Add
	  ability to specify color of NA cells.

2004-05-27 15:11  warnes

	* trunk/gplots/man/plotCI.Rd: Fix spelling error.

2004-05-26 14:56  warnes

	* trunk/gplots/R/overplot.R: One more fix to get it right.

2004-05-26 13:50  warnes

	* trunk/gplots/R/overplot.R: Use triple-colon operator ':::' to
	  access plot.formula from the graphics package.

2004-05-26 13:19  warnes

	* trunk/gplots/man/rich.color.Rd: Replace 'F' by 'FALSE' to pass R
	  CMD check.

2004-05-25 18:32  warnes

	* trunk/gplots/R/overplot.R: Work around bug in R 1.9.X due to
	  plot.formula() not having the same
	  arguments as plot().

2004-05-25 17:33  warnes

	* trunk/gplots/R/rich.color.R, trunk/gplots/man/rich.color.Rd: Add
	  rich.colors() submitted by Arni Magnusson
	  <arnima@u.washington.edu>.

2004-05-25 02:58  warnes

	* trunk/gplots/R/ooplot.R, trunk/gplots/man/ooplot.Rd: ??

2004-05-24 23:43  warnes

	* trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R: Modified to
	  use invalid() to check arguments instead of missing().
	  This fixes some build errors under R-1.9.0-Patched.

2004-04-22 15:44  warnes

	* trunk/gplots/R/ooplot.R, trunk/gplots/man/ooplot.Rd: Integrate
	  changes from Lodewijk Bonebakker <bonebakker@comcast.net>

2004-04-13 13:42  warnes

	* trunk/gplots/R/space.R, trunk/gplots/man/space.Rd: Add ability
	  to space points along 'y' direction.

2004-04-02 19:06  warnes

	* trunk/gplots/R/smartlegend.R: Fixed smartlegend() positioning
	  when x and/or y axis are log-scale.

2004-03-30 19:04  warnes

	* trunk/gplots/R/textplot.R, trunk/gregmisc/DESCRIPTION: - Fix bug
	  in textplot() reported by Wright, Kevin
	  <kevin.d.wright@pioneer.com>.

2004-03-26 22:27  warnes

	* trunk/gplots/man/textplot.Rd: Update to match changes in
	  textplot() code.

2004-03-26 22:25  warnes

	* trunk/gplots/man/ooplot.Rd: Remove Windows EOL characters.

2004-03-26 22:20  warnes

	* trunk/gplots/man/barplot2.Rd: - Remove some commented-out code.
	  - Remove cvs log tag.

2004-03-26 22:16  warnes

	* trunk/gplots/R/textplot.R: Misc changes.

2004-02-17 22:22  warnes

	* trunk/gplots/man/ooplot.Rd: Minor fix to ooplot documentation.

2004-02-17 22:21  warnes

	* trunk/gplots/R/ooplot.R, trunk/gplots/man/ooplot.Rd: Integrate
	  ooplot updates provided by Lodewijk Bonebakker
	  <bonebakker@comcast.net>

2004-02-02 16:26  warnes

	* trunk/gplots/R/colorpanel.R, trunk/gplots/man/colorpanel.Rd: -
	  Add colorpanel function, which generates a smoothly varying band
	  of
	  colors over a three color range (lo, mid, high).

2004-01-21 12:07  warnes

	* trunk/gplots/man/textplot.Rd: - Correct arguments to halign to
	  match code.

2004-01-21 05:17  warnes

	* trunk/gplots/R/lowess.R: Track R 1.9.0's move of 'lowess' from
	  the base package to the (new)
	  stats package.

2004-01-21 04:44  warnes

	* trunk/gplots/man/sinkplot.Rd: - Fix sinkplot() example by
	  replacing 'T' with 'TRUE'.

2004-01-21 04:42  warnes

	* trunk/gplots/man/ooplot.Rd: - Add some more details to the
	  ooplot() documentation. The
	  documentation is *not* complete.

2004-01-21 04:31  warnes

	* trunk/gplots/R/textplot.R, trunk/gtools/R/capture.R: - Mark
	  sprint() as depreciated.
	  - Replace references to sprint with capture.output()
	  - Use match.arg for halign and valign arguments to
	  textplot.default.
	  - Fix textplot.character so that a vector of characters is
	  properly
	  displayed. Previouslt, character vectors were plotted on top
	  of each
	  other.

2004-01-19 23:43  warnes

	* trunk/gplots/R/sinkplot.R, trunk/gplots/man/sinkplot.Rd: New
	  function sinkplot(), as requested on R-devel by Kevin Wright
	  <kwright@eskimo.com> in
	  https://www.stat.math.ethz.ch/pipermail/r-devel/2004-January/028483.html.

2004-01-15 05:14  warnes

	* trunk/gplots/R/ooplot.R, trunk/gplots/man/ooplot.Rd: Add initial
	  code and docs for ooplot() function submitted by Lodewijk
	  Bonebakker <bonebakker@comcast.net>.

2003-12-03 02:46  warnes

	* trunk/gdata/man/elem.Rd, trunk/gdata/man/ll.Rd,
	  trunk/gplots/man/lowess.Rd, trunk/gplots/man/textplot.Rd,
	  trunk/gplots/man/wapply.Rd, trunk/gtools/man/foldchange.Rd: -
	  match function argument defaults with 'usage'

2003-12-03 02:42  warnes

	* trunk/gplots/R/heatmap.2.R, trunk/gplots/man/heatmap.2.Rd: - Fix
	  buglets in heatmap function
	  - Make a slight enhancement to the example code.

2003-12-02 22:49  warnes

	* trunk/gplots/R/heatmap.2.R: Integrated some suggestions from
	  Sean Davis <sdavis2@mail.nih.gov>.

2003-12-02 18:22  warnes

	* trunk/gplots/man/heatmap.2.Rd: - Make final example use 16
	  colors instead of 8. This looks nicer.

2003-12-02 16:58  warnes

	* trunk/gplots/man/barplot2.Rd: - Remove '%' character from
	  example code to avoid errors.

2003-12-02 16:54  warnes

	* trunk/gplots/R/plotCI.R: - Add '...' parameter to call to text
	  to allow user to control size/color/etc.

2003-12-01 16:00  warnes

	* trunk/gplots/man/barplot2.Rd: - updated to match changes to
	  barplot() in base.

2003-12-01 15:59  warnes

	* trunk/gplots/data, trunk/gplots/data/rtPCR.rda: - Renamed
	  rtPCR.Rda to rtPCR.rda so that R will properly load the file
	  when data(rtPCR) is executed.

2003-12-01 15:55  warnes

	* trunk/gplots/R/barplot2.R: - Follow patches applied to barplot()
	  in base.

2003-11-24 21:32  warnes

	* trunk/gplots/man/heatmap.2.Rd: Fix unbalanced braces.

2003-11-24 15:09  warnes

	* trunk/gplots/R/overplot.R, trunk/gplots/man/overplot.Rd: Fix
	  errors reported by R CMD check.

2003-11-21 23:13  warnes

	* trunk/gplots/man/overplot.Rd: Added missing closing brace.

2003-11-21 23:08  warnes

	* trunk/gplots/man/rtPCR.Rd: Initial addition of these files.
	  Used in examples of overplot().

2003-11-21 22:59  warnes

	* trunk/gplots/R/heatmap.2.R, trunk/gplots/man/heatmap.2.Rd:
	  Applied my enhancements to the heatmap() code from R 1.8.0, and
	  added
	  documentation of these changes.

2003-11-21 22:58  warnes

	* trunk/gplots/R/overplot.R, trunk/gplots/man/overplot.Rd: -
	  Discovered that axis(N) does the right thing without needing to
	  be
	  given location for tick marks. This allowed simplification of
	  the code.
	  
	  - Minor other changes for distribution
	  
	  - Addition of overplot.Rd documentation.

2003-11-21 19:50  warnes

	* trunk/gplots/R/heatmap.2.R, trunk/gplots/man/heatmap.2.Rd: -
	  Integrated my extensions into the R 1.8.0 version of heatmap.
	  - Add Rd documentation.

2003-11-19 14:52  warnes

	* trunk/gplots/man/bandplot.Rd: Remove extranious NULL that
	  confused R CMD check.

2003-11-18 18:59  warnes

	* trunk/gplots/man/barplot2.Rd: - Tiny fix to remove R CMD check
	  error.

2003-11-18 18:58  warnes

	* trunk/gplots/man/smartlegend.Rd: - Added missing closing brace.

2003-11-18 18:45  warnes

	* trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
	  trunk/gdata/R/is.what.R, trunk/gdata/R/keep.R,
	  trunk/gdata/R/ll.R, trunk/gplots/R/overplot.R: - Convert from
	  MS-Dos to Unix line endings.
	  - Reformat to 80 columns.

2003-11-10 22:11  warnes

	* trunk/gdata/R/elem.R, trunk/gdata/R/env.R,
	  trunk/gdata/R/is.what.R, trunk/gdata/R/keep.R,
	  trunk/gdata/R/ll.R, trunk/gdata/man/elem.Rd,
	  trunk/gdata/man/env.Rd, trunk/gdata/man/is.what.Rd,
	  trunk/gdata/man/keep.Rd, trunk/gdata/man/ll.Rd,
	  trunk/gplots/R/heatmap.2.R, trunk/gplots/R/overplot.R,
	  trunk/gplots/R/plotmeans.R, trunk/gplots/R/space.R,
	  trunk/gplots/R/wapply.R, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/capture.R, trunk/gtools/man/capture.Rd: - Add
	  files contributed by Arni Magnusson
	  <arnima@u.washington.edu>. As well as some of my own.

2003-08-19 14:58  warnes

	* trunk/gplots/R/heatmap.2.R: - Copy of local changes.

2003-08-19 14:57  warnes

	* trunk/gplots/R/heatmap.2.R: - Checkin before re-integrating
	  local changes.

2003-06-19 21:23  warnes

	* trunk/gplots/R/heatmap.2.R: - Added enhanced heatmap function.

2003-06-09 15:10  warnes

	* trunk/gplots/man/smartlegend.Rd: - Add help text for smartlegend.

2003-06-09 14:57  warnes

	* trunk/gplots/R/smartlegend.R: - New function smartlegend().

2003-04-22 17:28  warnes

	* trunk/gplots/R/plotmeans.R: - Fixeed warning messing caused when
	  'connect' is a vector.

2003-04-22 15:34  warnes

	* trunk/gplots/R/barplot2.R: Update from Marc Schwartz, modified
	  by Gregory Warnes:
	  
	  - Modified dim() checks for 'ci.l' and 'ci.u' against 'height'
	  to remove R v1.7.0 if() based error msgs for vector
	  conditions.

2003-04-04 13:49  warnes

	* trunk/gplots/R/balloonplot.R, trunk/gplots/man/qqnorm.aov.Rd,
	  trunk/gtools/R/dirichlet.R: - Change occurences of 'T' to 'TRUE'

2003-04-04 13:44  warnes

	* trunk/gplots/man/textplot.Rd: - Updated to match changes in
	  textplot function:
	  - Added textplot.character
	  - Renamed arguments "col.margin" and "row.margin" to "cmar",
	  and
	  "rmar" so that specifying "col='red'" is possible.
	  - Fixed R CMD check errors
	  - Improve comments in example
	  - Add textplot.matrix example

2003-04-04 13:41  warnes

	* trunk/gplots/R/textplot.R: - Added textplot.character to handle
	  character strings.
	  - Moved test for vector and matrix arguments to textplot.default.
	  - Renamed arguments "col.margin" and "row.margin" to "cmar", and
	  "rmar" so that specifying "col='red'" is possible.

2003-04-02 22:29  warnes

	* trunk/gplots/R/textplot.R, trunk/gplots/man/textplot.Rd: - Added
	  textplot function and friends, as well as documentation.

2003-03-08 16:30  warnes

	* trunk/gplots/man/balloonplot.Rd: - Forgot to update arglist in
	  \usage section.

2003-03-08 16:22  warnes

	* trunk/gplots/R/balloonplot.R, trunk/gplots/man/balloonplot.Rd: -
	  Added parameters for rotation of and amount of space allocated
	  for
	  the row and column labels.

2003-03-07 15:48  warnes

	* trunk/gmodels/R/fast.prcomp.R, trunk/gplots/R/hist2d.R,
	  trunk/gplots/R/qqnorm.aov.R, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/RSCompat.S: - Minor changes to code to allow the
	  package to be provided as an
	  S-Plus chapter.

2003-03-07 15:43  warnes

	* trunk/gplots/R/lowess.R: - Add 'NULL' as the last element of if
	  statement that defines
	  lowess.default so that when the file is sourced, S-Plus doesn't
	  display the function definition.

2003-03-07 15:41  warnes

	* trunk/gplots/R/lowess.R: - Specify where the defualt lowess
	  function should be found.
	  - Use getFunction in S-Plus instead of 'get'

2003-01-30 21:43  warnes

	* trunk/gplots/R/barplot2.R, trunk/gplots/man/barplot2.Rd: - Added
	  argument 'add' to allow for the addition of a barplot to an
	  existing graphic. Default is FALSE

2003-01-20 18:35  warnes

	* trunk/gplots/R/balloonplot.R, trunk/gplots/man/balloonplot.Rd: -
	  Updated balloonplot help page.

2003-01-20 17:13  warnes

	* trunk/gplots/R/wapply.R, trunk/gplots/man/wapply.Rd: - Updated
	  wapply.R to allow specification of evaluation points when
	  method is 'width' or 'range' using the 'pts' argument.
	  - Updated wapply.Rd to add 'pts' argument
	  - Fixed typos, spelling errors, gramatical errors and lack of
	  clarity
	  in wapply.Rd help text.

2003-01-03 21:34  warnes

	* trunk/gplots/R/balloonplot.R, trunk/gplots/man/balloonplot.Rd: -
	  Initial checkin of balloonplot functions and documentation.

2003-01-03 19:23  warnes

	* trunk/gplots/man/space.Rd: - Added reference to and comparison
	  example of sunflowerplot.
	  - Added code to put example plots on same plot window using
	  par(mfrow=...).

2003-01-02 16:09  warnes

	* trunk/gplots/R/barplot2.R: - Changed assignment statements that
	  used "=" to "<-" to avoid syntax
	  errors in older versions of the S language.

2003-01-02 16:07  warnes

	* trunk/gplots/R/lowess.R: - Added wrapper code so that R-specific
	  fiddling won't be executed
	  under S-Plus.

2003-01-02 15:40  warnes

	* trunk/gplots/R/qqnorm.aov.R, trunk/gplots/man/qqnorm.aov.Rd: -
	  Renamed first parameter to match qqnorm generic.

2003-01-02 15:14  warnes

	* trunk/gplots/man/qqnorm.aov.Rd: Added additional help text from
	  Kjeitl.

2002-12-31 19:50  warnes

	* trunk/gplots/R/qqnorm.aov.R, trunk/gplots/man/qqnorm.aov.Rd:
	  Initial checkin of qqnorm.aov function and documentation
	  submitted by
	  Kjetil Halvorsen <kjetilh@jupiter.umsanet.edu.bo>.

2002-11-04 14:21  warnes

	* trunk/gplots/R/barplot2.R, trunk/gplots/man/barplot2.Rd: Updates
	  from Marc Schwartz:
	  
	  - Updated underlying code to be based upon the new barplot() in
	  R v1.6.1
	  - This now uses the 'axis.lty' and 'border' arguments
	  - In R v1.6.0, R Core introduced a new function called axTicks().
	  This is an R equivalent of the C code for CreateAtVector in
	  plot.c.
	  This now enables me to get the axis tick mark positions
	  consistently
	  when the 'height' related axis is either linear or log. Thus,
	  I can
	  now have consistent tick marks and can plot grid lines in
	  either
	  situation. If 'plot.grid = TRUE' and 'grid.inc' is specified,
	  then
	  I still use pretty() to determine the tick marks and lines.
	  - This code now depends on R 1.6.0 or later.

2002-10-30 02:21  warnes

	* trunk/gplots/R/plot.lm.R: - Commented out plot.lm() code since
	  recent changes in R have broken it.

2002-10-11 18:02  warnes

	* trunk/gplots/R/barplot2.R: - Fixed log scale errors in legend()
	  call

2002-10-01 18:16  warnes

	* trunk/gplots/man/hist2d.Rd: - Added examples of using 'contour'
	  and 'filled.contour' for display.

2002-09-24 14:53  warnes

	* trunk/gplots/R/plotmeans.R: - Changed digits=options("digits")
	  which produces a list of length 1
	  to digits=getOption("digits") which returns a vector of length
	  one.
	  The former was causing an error when passed to round().

2002-09-23 14:27  warnes

	* trunk/gmodels/man/CrossTable.Rd, trunk/gmodels/man/glh.test.Rd,
	  trunk/gplots/man/barplot2.Rd: - Fixed syntax errors in
	  barplot2.Rd and CrossTable.Rd
	  - Fixed incorrect translation of 'F' (distribution) to 'FALSE'
	  in glh.test.Rd

2002-09-23 13:59  warnes

	* trunk/gdata/R/aggregate.table.R, trunk/gdata/R/combine.R,
	  trunk/gdata/R/interleave.R, trunk/gdata/R/nobs.R,
	  trunk/gdata/man/aggregate.table.Rd, trunk/gdata/man/combine.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/nobs.Rd,
	  trunk/gdata/man/rename.vars.Rd, trunk/gdata/man/reorder.Rd,
	  trunk/gmodels/R/ci.R, trunk/gmodels/man/estimable.Rd,
	  trunk/gmodels/man/glh.test.Rd, trunk/gplots/R/boxplot.n.R,
	  trunk/gplots/R/hist2d.R, trunk/gplots/R/lowess.R,
	  trunk/gplots/R/residplot.R, trunk/gplots/man/bandplot.Rd,
	  trunk/gplots/man/hist2d.Rd, trunk/gplots/man/lowess.Rd,
	  trunk/gplots/man/plotCI.Rd, trunk/gplots/man/space.Rd,
	  trunk/gtools/man/combinations.Rd, trunk/gtools/man/quantcut.Rd:
	  - Modified all files to include CVS Id and Log tags.

2002-09-23 13:38  warnes

	* trunk/gmodels/R/CrossTable.R, trunk/gmodels/man/CrossTable.Rd,
	  trunk/gplots/R/barplot2.R, trunk/gplots/man/barplot2.Rd,
	  trunk/gregmisc/DESCRIPTION, trunk/gtools/R/combinations.R: -
	  Added CrossTable() and barplot2() code and docs contributed by
	  Marc Schwartz.
	  - Permit combinations() to be used when r>n provided
	  repeat.allowed=TRUE
	  - Bumped up version number

2002-08-01 19:37  warnes

	* trunk/gmodels/R/ci.R, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/estimable.Rd, trunk/gmodels/man/glh.test.Rd,
	  trunk/gplots/R/hist2d.R, trunk/gplots/R/wapply.R,
	  trunk/gregmisc/DESCRIPTION, trunk/gtools/R/running.R: -
	  Corrected documentation mismatch for ci, ci.default.
	  
	  - Replaced all occurences of '_' for assignment with '<-'.
	  
	  - Replaced all occurences of 'T' or 'F' for 'TRUE' and 'FALSE'
	  with
	  the spelled out version.
	  
	  - Updaded version number and date.

2002-04-09 00:51  warneg

	* trunk/gdata/R/rename.vars.R, trunk/gdata/man/aggregate.table.Rd,
	  trunk/gdata/man/interleave.Rd, trunk/gdata/man/reorder.Rd,
	  trunk/gmodels/R/ci.R, trunk/gmodels/R/estimable.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/man/glh.test.Rd,
	  trunk/gplots/R/bandplot.R, trunk/gplots/R/boxplot.n.R,
	  trunk/gplots/R/hist2d.R, trunk/gplots/R/plot.lm.R,
	  trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R,
	  trunk/gplots/R/residplot.R, trunk/gplots/R/space.R,
	  trunk/gplots/R/wapply.R, trunk/gplots/man/bandplot.Rd,
	  trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/hist2d.Rd,
	  trunk/gplots/man/plotmeans.Rd, trunk/gplots/man/space.Rd,
	  trunk/gplots/man/wapply.Rd, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/combinations.R, trunk/gtools/man/combinations.Rd,
	  trunk/gtools/man/running.Rd: Checkin for version 0.5.3

2002-03-27 20:51  warneg

	* trunk/gplots/man/lowess.Rd: Added "..." argument to
	  lowess.default.

2002-03-27 19:48  warneg

	* trunk/gplots/R/lowess.R: - Added code to append "..." to the
	  argument list of lowess.default.
	  
	  - Fixed a wrong default for f in lowess.formula. Was 3, but
	  should
	  have been 2/3.

2002-03-26 21:22  warneg

	* trunk/gdata/man/reorder.Rd, trunk/gmodels/R/ci.R,
	  trunk/gmodels/R/glh.test.R, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/glh.test.Rd, trunk/gplots/R/lowess.R,
	  trunk/gplots/man/lowess.Rd: - Changed methods to include '...'
	  to match the generic.
	  - Updated for version 0.5.1

2002-03-26 19:24  warneg

	* trunk/gplots/man/hist2d.Rd: Initial checkin.

2002-03-20 04:17  warneg

	* trunk/gplots/R/plotmeans.R: - Changes to add compatibility with
	  S-Plus 2000

2002-03-20 04:16  warneg

	* trunk/gplots/R/plotCI.R: - Changes to add compatibility with
	  S-Plus 2000.

2002-03-20 03:48  warneg

	* trunk/gplots/R/boxplot.n.R: - Updated to work in S-Plus 2000 as
	  well as R.

2002-03-05 16:44  warneg

	* trunk/gplots/R/plotmeans.R: - Replace "T" with "TRUE". Problems
	  arrive when there is a variable named "T".

2002-02-20 20:09  warneg

	* trunk/gdata/man/rename.vars.Rd, trunk/gmodels/man/ci.Rd,
	  trunk/gmodels/man/estimable.Rd, trunk/gmodels/man/glh.test.Rd,
	  trunk/gplots/man/lowess.Rd, trunk/gplots/man/plotCI.Rd,
	  trunk/gplots/man/space.Rd: Minor changes, typo and formatting
	  fixes.

2002-02-20 20:06  warneg

	* trunk/gplots/R/bandplot.R, trunk/gplots/man/bandplot.Rd: -
	  Generalized to allow specification of the multiples of the
	  standard deviation levels to be plotted (0=mean, 1=1 sd, ..).
	  - Now (invisibly) returnes computed smooths.

2002-02-16 18:16  warneg

	* trunk/gplots/man/bandplot.Rd: Added bandplot documentation.

2002-02-16 17:58  warneg

	* trunk/gplots/R/wapply.R: - Fixed Bug: When method=="range", the
	  absolute range of x was being
	  used to compute the relative width instead of the (correct)
	  relative
	  range.

2002-02-16 17:23  warneg

	* trunk/gplots/R/wapply.R: - Corrected problem removing missing
	  values: The missing values of $x
	  and $y were being removed indepdendently, leaving an uneven
	  number
	  of points in the result.

2002-02-04 23:20  warneg

	* trunk/gplots/R/space.R: - Add na.rm parameter and make the
	  default TRUE.

2002-02-04 23:19  warneg

	* trunk/gplots/R/hist2d.R: Initial checkin.

2002-02-04 19:12  warneg

	* trunk/gplots/R/plotCI.R: - When err="x", 'col' was being used to
	  plot bars, rather than 'barcol'.

2002-02-04 19:09  warneg

	* trunk/gplots/R/plotCI.R: - fixed typo, when err="x", lty was
	  'slty' causing an error.

2001-12-12 01:41  warneg

	* trunk/gplots/man/space.Rd: - Quoted underscore character in my
	  email address.
	  - Added correct keyword.

2001-12-12 01:37  warneg

	* trunk/gplots/man/plotmeans.Rd: Added documentation for xaxt
	  parameter.

2001-12-12 01:34  warneg

	* trunk/gplots/R/lowess.R: Updated to explicitly list control
	  arguments to lowess.formula.
	* trunk/gplots/man/lowess.Rd: Initial checkin. Code copied from R
	  source package and extended.

2001-12-07 23:34  warneg

	* trunk/gplots/man/wapply.Rd: Fixed an problem where \code was
	  incorrectly delimited by parens
	  rather than curly brackets.

2001-12-07 22:33  warneg

	* trunk/gplots/R/lowess.R, trunk/gplots/R/plot.lm.R,
	  trunk/gplots/R/residplot.R, trunk/gplots/man/space.Rd: Initial
	  checkin.

2001-12-07 22:24  warneg

	* trunk/gplots/R/space.R: - Added cvs tags.

2001-12-07 22:23  warneg

	* trunk/gplots/R/space.R: - Leave first point at center, rather
	  than shifting by s/2 to the left. This looks better when there
	  are more than 2 'spaced' points.

2001-12-05 19:49  warneg

	* trunk/gplots/R/plotmeans.R: - Added ability to use the
	  t-distribution to compute confidence
	  intervals. This is controlled using the 'use.t' parameter.

2001-12-05 19:41  warneg

	* trunk/gplots/man/plotmeans.Rd: - Added documentation of use.t
	  parameter.

2001-12-05 19:36  warneg

	* trunk/gplots/man/wapply.Rd: - Clarified how the width of the
	  window is computed when method="nobs".

2001-12-05 19:29  warneg

	* trunk/gplots/R/wapply.R: - Added a better default for "width"
	  when method="nobs". For this case,
	  width=max(5, length(x)/10).
	  
	  - Allow omission of x values which result in missing y values via
	  'drop.na' parameter.

2001-10-26 02:48  warneg

	* trunk/gplots/R/plotmeans.R: Added correct handling of 'xaxt="n"'.

2001-10-16 23:15  warneg

	* trunk/gmodels/man/ci.Rd, trunk/gplots/man/wapply.Rd: Fixed
	  unbalanced brace.

2001-10-16 23:06  warneg

	* trunk/gplots/man/plotCI.Rd: Added minbar and maxbar parameters.

2001-10-16 23:04  warneg

	* trunk/gplots/man/plotmeans.Rd: Forgot to add minbar and maxbar
	  to usage section.

2001-10-16 23:03  warneg

	* trunk/gplots/man/plotmeans.Rd: Added description of minbar and
	  maxbar.

2001-10-16 23:00  warneg

	* trunk/gplots/R/plotCI.R: - Added minbar and maxbar parameters
	  - Added cvs id and log tags to header

2001-10-16 22:59  warneg

	* trunk/gplots/R/plotmeans.R: Added cvs id and log tag to file
	  header

2001-10-16 22:57  warneg

	* trunk/gplots/R/plotmeans.R: Added minbar and maxbar parameters.

2001-10-16 22:35  warneg

	* trunk/gplots/man/plotmeans.Rd: Added description of minsd
	  parameter.
	* trunk/gplots/R/plotmeans.R: Added minsd parameter.

2001-09-18 14:15  warneg

	* trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R,
	  trunk/gregmisc/DESCRIPTION, trunk/gtools/R/RSCompat.S: Release
	  0.3.2

2001-09-01 00:01  warneg

	* trunk/gplots/man/wapply.Rd, trunk/gregmisc/DESCRIPTION,
	  trunk/gtools/R/running.R, trunk/gtools/man/running.Rd: Release
	  0.3.0

2001-08-31 23:45  warneg

	* trunk/gplots/R/wapply.R: Used wrong character in header (%
	  instead of #). Fixed.

2001-08-31 23:41  warneg

	* trunk/gplots/R/bandplot.R: Used wrong comment character (%
	  instead of #) in header. Fixed.

2001-08-25 05:48  warneg

	* trunk/gplots/R/wapply.R: Initial checkin.

2001-08-25 05:46  warneg

	* trunk/gplots/man/boxplot.n.Rd, trunk/gplots/man/plotmeans.Rd:
	  Added CVS header.

2001-08-25 05:45  warneg

	* trunk/gplots/man/wapply.Rd: Initial Checkin

2001-05-30 13:23  warneg

	* trunk/gmodels, trunk/gmodels/R, trunk/gmodels/R/ci.R,
	  trunk/gmodels/man, trunk/gmodels/man/ci.Rd, trunk/gplots,
	  trunk/gplots/R, trunk/gplots/R/boxplot.n.R,
	  trunk/gplots/R/plotCI.R, trunk/gplots/R/plotmeans.R,
	  trunk/gplots/man, trunk/gplots/man/boxplot.n.Rd,
	  trunk/gplots/man/plotCI.Rd, trunk/gplots/man/plotmeans.Rd,
	  trunk/gregmisc, trunk/gregmisc/DESCRIPTION: Initial revision

