0f432482fb9aff0c54a15e09374da837 *DESCRIPTION
10bb2a80e02d318a6ad07e7a97386c56 *LICENSE
226dbc241c46941c19ec58d4d59df5b1 *NAMESPACE
4d2aa1e2a3031d48b28ead85091363ff *R/AdjustAlphaScale.R
bbaee5ce61782532422c056721bf5ff9 *R/CircosFruits.R
dd40d318b20fb1729d4505906ca8abbd *R/CombatNormal.R
a613c503c0d1f1d7a71de1e7103784ee *R/CombatTumor.R
112dc726b0b04a6ea3a6e3982226193f *R/CompareMerge.R
6eebd14e24818bff99f7227dda35f51d *R/Contrast_Venn.R
718668e8d0f3e9212171ac7116a85fb9 *R/DESeq2Analyze.R
5d112df10e0a901d425808c59d053bf0 *R/EdgeRAnalyze.R
cc0348cc2d14b7aac02c5bdbc898e497 *R/EnrichCirclize.R
eeb39ea25a9370f7f4c6e40515390103 *R/EnrichCircoBar.R
1aa53883efa7bd615126ee98fb9368a9 *R/EnrichPolarBubble.R
3f45f437ee90f271146de37f5c5441e3 *R/EnrichmentSpiralize.R
c231278ab445aef1fbd16cf452c8a1a8 *R/FacetDensityFoldchange.R
6a92f4cd24c2997b406c4570a94aafe8 *R/FilterDiffGenes.R
afaa056947f57b57e9ce119136945489 *R/FourDegsVenn.R
f82f2279600e1b37047dcaee313e4c91 *R/GatherGraphEdge.R
f16e18a09603ea15aa013dbb789afd71 *R/GatherGraphNode.R
78653104a5ef962d82c836ee04d3abe1 *R/GeneColor.R
1cb2995e33a5b0489ce1331091b1f1ad *R/GeneHighlights.R
67006cb5c7249e3e6989461afc0ddf09 *R/GeneMapPathway.R
238a94494503e588bc6abd5dbe6f4849 *R/GetGtexExp.R
0cde31ac88ff1fccf61b0cdc38bbc3cd *R/GetTcgaExp.R
7f60055ff309eaecd19fd9154afe511d *R/HighlightByNode.R
f537170484a2e8ab97936b6ae56ab3e8 *R/HighlightGenes.R
c6c3280570dbad674a3e8609efa1e1bc *R/LimmaAnalyze.R
d0713ae594bd54c5e276dc952efdeaf2 *R/LogTransform.R
4298941d824e634bf80a1060e8ffbe00 *R/MergeDensityFoldchange.R
cdb8fb9e1ddde61b806a45dc4f3c2d70 *R/MergeGtexTcga.R
80c2ce8063275b5b8db9366d67815bb2 *R/MergeIDPosition.R
cf87a49bb05b93df87f943beaf83963a *R/MergeMethodColor.R
afc731b37861f13d65e89dc2a80d7f46 *R/NewGgraph.R
9479f9611810f5ece7b0a709b125102d *R/PathwayCount.R
4e55d53cbd067a4a6e82d0b9badffb99 *R/PathwayDescription.R
f2b5b0eb0667878f0c0a2a249829622c *R/PrepDeseq2.R
d594979a23a958954493e2ec548a5f79 *R/PrepEdgeR.R
93d871dce7745406442e2f3a8c979c76 *R/PrepLimma.R
9905bac31102300c97190d1454488275 *R/PrepWilcoxon.R
66df312799f50da6a1b143a2a64c61f1 *R/ProcessHeatdata.R
ed3ef3f712d953e8b610a6f6710ea82a *R/SeekGtexOrgan.R
ec1a7fd46e74144568d3f602569f9e10 *R/WilcoxonAnalyze.R
57719c858bd114f34427b84d2f2bfe56 *R/data.R
cf794928715019cf81bd51d467156178 *R/utils-pipe.R
b22136246687ad8f5a0222dfa37299ba *R/zzz.R
96a9453eb8b7a74d5223861651c620b5 *README.md
dc2c8f2596305123205e662360298551 *build/vignette.rds
5215cf18b14870ffdd6ad072c158ba43 *data/all_degs_venn.rda
f18001c25f364c3909db26c93cb6a88f *data/gtree.rda
54db39f8616b2f99dc3c5c78120ffa82 *inst/doc/TransProR.Rmd
32b83157a54324b68db958a02df64963 *inst/doc/TransProR.html
2442aef4faea38268525d47a1b6d36c6 *inst/extdata/DEG_deseq2.rds
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0174fb7c7a07094506d959aa434686be *inst/extdata/GTEX_phenotype_test
528fb89e9269efb409de830563ea6afa *inst/extdata/SKCM_Skin_TCGA_exp_normal_test.rds
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12b4f48ab601ac76d0d218f37860b5ec *inst/extdata/TCGA-SKCM.htseq_counts_test.tsv
5ea4d526031719451d116cdf4baf4a08 *inst/extdata/TCGA_gencode.v22.annotation.gene.probeMap_test
a00c9d9ecfbe5780367e4382e2277894 *inst/extdata/Wilcoxon_rank_sum_testoutRst_test.rds
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b2384d7ef4706a48fc5eef76a7fac871 *man/DESeq2_analyze.Rd
54f650a573b63c38e180161e4692e271 *man/Wilcoxon_analyze.Rd
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8e6b4d8463fd9e6ad88754d254e97f68 *man/adjust_alpha_scale.Rd
269c80407e62466fb2ec9fdd4239ecbd *man/adjust_color_tone.Rd
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0be54467c8bdfbc2aeeb5e5bad2fbabd *man/circos_fruits.Rd
27dc0bce9fab04dfa6918cacb4b0c45c *man/combat_tumor.Rd
5d0d80521da101ece77c7a7ec206ed88 *man/compare_merge.Rd
995edb98cbf70e309f9c198d0ed75991 *man/create_base_plot.Rd
f584048e715c43e24b9fd6c6c3c15aab *man/deg_filter.Rd
1358fd8a097009810a0dd4ef7dd1e0da *man/drawLegends.Rd
c18c9138d6f0619bd878c7810d994ea4 *man/edgeR_analyze.Rd
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109f1e47c72b5cb12b501f4e465f9f4f *man/enrichment_circlize.Rd
57eed93d46168259d9af2ddb8549cbbf *man/enrichment_spiral_plots.Rd
f274a91d3a10b5ea87eb67f6bdd968c2 *man/extract_descriptions_counts.Rd
2f118b9e6dfd464029831466a4d5304e *man/extract_ntop_pathways.Rd
f64ff8563a92047719fb8e999be3a103 *man/extract_positive_pathways.Rd
d0683fb23ce339b68bab5f75ad1bd7fc *man/facet_density_foldchange.Rd
38d59d9b3b6ea2d2d72cc210db400087 *man/filter_diff_genes.Rd
13c97de16548e8b2f419f6e3767611f8 *man/four_degs_venn.Rd
293ac6f8d2dd414d3f2bca388544a9e6 *man/gather_graph_edge.Rd
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4a4a95a579215fb8d6ffdc9b39060c4e *man/gene_highlights.Rd
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99552ea7938072ebbdefb30d1cd26ef8 *man/get_gtex_exp.Rd
b706b6b1aa862b420ba6926f5acbc804 *man/get_tcga_exp.Rd
263568a23148ee1e20c91e5e9ca07e7c *man/gtree.Rd
a268d871e6df2a9e40d7dc94f9b0f6cc *man/highlight_by_node.Rd
c8d1251237af3e50c1993e544117520b *man/highlight_genes.Rd
f55b48dd6219f5c1f96dbac4b4ed2318 *man/limma_analyze.Rd
2bae488dfa55683a070929b69cbacc57 *man/log_transform.Rd
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4a383e2a7dc85282556297d140f44538 *man/merge_method_color.Rd
7dbca868508e2b4e2f2ba8e45ce7ac37 *man/new_ggraph.Rd
50dbfc89292b5a1715f956edf78c9363 *man/pathway_count.Rd
faaa2f6a0c457a20a01c99c14e86bb7c *man/pathway_description.Rd
774d9de8e95aa151215efcd304549d41 *man/pipe.Rd
7d1a57328a39c0969f1afc6e93a54205 *man/prep_deseq2.Rd
7db25b7a4690d2cd6774152e8997494d *man/prep_edgeR.Rd
70297fdbab13020712395488f1acf12f *man/prep_limma.Rd
21c10d7cc11742ddd46a8ce26a1a55ff *man/prep_wilcoxon.Rd
32c33ffc8fb3aa31cdbf807f05560a30 *man/process_heatdata.Rd
9bee91024a56b36ca93e281de8d9fcfb *man/seek_gtex_organ.Rd
e362d0d281eb1325988e5359c264c19d *man/selectPathways.Rd
93195bcde9e73239a779a13cf091b0f1 *man/spiral_newrle.Rd
54db39f8616b2f99dc3c5c78120ffa82 *vignettes/TransProR.Rmd
666b28b290f02d1013362c1c605f4be9 *vignettes/image/TransProR_rlogo.png
