ba6782aa59d3cf91229bf6110dde9d8f *DESCRIPTION
2779dd14618c45d2eb71ed9de61236ae *NAMESPACE
bcb7902acbf59b739de71af169fd68f7 *NEWS.md
72e21d027fee1d5044016232dadda26a *R/AllClasses.R
96631263c1ab21f4c53a06c13b977653 *R/AllGenerics.R
ab8040bf614d920ea800e7dcab0d4a6e *R/SpatialDDLS.R
5c7ee4179de69faa013d497870c050cf *R/dnnModel.R
0aba3c1b2a2e2acced02218fc3cf9555 *R/evalMetrics.R
484b0bbb7f682d2b43c874119f0ad007 *R/interGradientsDL.R
9d8a0170c76e948cf1cfc6f6ae0059a1 *R/loadData.R
5b45e69c2ea3e5f6f5748eacffcf2506 *R/plotSpatialCoor.R
d08e990ac5cf2601eb10175c6c016a19 *R/simMixedSpots.R
72330b9a1eda628185abab676b4f9ccd *R/simSingleCell.R
32885c5f331665460c4a89ff22545fab *R/spatialClustering.R
b05dc9a29755e37e47edfe7d78fb8617 *R/utils.R
3cb194e33169b34a79faaf7768f053f7 *README.md
8faf250d78a120ba4c7ea2186efddd24 *build/partial.rdb
c180ce827961e600b031e9ef5ffaff79 *build/vignette.rds
9d21d809809ac400c2e1b5514aeb8346 *inst/CITATION
4bcd2b156b2a11a82ec324f8360dea22 *inst/doc/realModelExample.Rmd
8b7dec15b78c2c85ac9df37cfb618c69 *inst/doc/realModelExample.html
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ad6901cc6164adf9f47dbf1f12bd0305 *man/PropCellTypes-class.Rd
3a7487504231b441c3f23cfdc68c7e9a *man/SpatialDDLS-Rpackage.Rd
a9a53d2148a07d99e4c5d9b71e98d842 *man/SpatialDDLS-class.Rd
f11c06941c6de55b30715dd539230db7 *man/ZinbParametersModel-class.Rd
96a6cc87d146f293f99189ef3b76aeba *man/barErrorPlot.Rd
95233f7f791807ebd6f4aa0453ee6de3 *man/barPlotCellTypes.Rd
53b857b2e453f1a6ee389e7b53256b2e *man/blandAltmanLehPlot.Rd
c0ea09d811a79ea70fcb4d51e009fa1d *man/calculateEvalMetrics.Rd
d2d32302b8d415b412a0d632f70fff52 *man/cell.names.Rd
80c6d6f35398f7e0dc3c9f5633773424 *man/cell.types.Rd
16fe8a6639d46a60c5d18a68fa7f2298 *man/corrExpPredPlot.Rd
eda9a4796f8cdb684c3ea82a14aec476 *man/createSpatialDDLSobject.Rd
65fd309d382c33ba4cdc12cf317034cc *man/deconv.spots.Rd
8baaa6bfed16b04c3d63f91bfb55b280 *man/deconvSpatialDDLS.Rd
2de9de4f976dd655ff844e440f1b4b83 *man/distErrorPlot.Rd
37e9c6ab13472d109264bd7b8e0ffcd4 *man/estimateZinbwaveParams.Rd
2787f7a3ba76dc63b20686a13d1238f9 *man/features.Rd
a56464e41df96380c47d38fc418c25c1 *man/figures/logo.png
4e1e7763d7ae189669bf06fc2226e128 *man/figures/summary.png
b6aabecc9928e8ee756386141b85171f *man/genMixedCellProp.Rd
86ca2482c258d55a8fd9a396280b7cd6 *man/getProbMatrix.Rd
35b3c28c965e88c48d309e8f1d4caf10 *man/installTFpython.Rd
6c8317742ba9bc804967cbc56d69db0e *man/interGradientsDL.Rd
f98b2d0fe116551d70bcab44c381c573 *man/loadSTProfiles.Rd
01b9ecdfb11472527507ce85fd48660f *man/loadTrainedModelFromH5.Rd
7d7f831a13208eb6cddd490e7ffd0f9d *man/method.Rd
a8aca198c75ade1503423d1150a343cb *man/mixed.profiles.Rd
d654c6c5bdd751e42f587ffa985eea7a *man/model.Rd
158de74f9d5b9ab2fc02415049d64f84 *man/plotDistances.Rd
a6fc054cf3db0ea59289c5e854e4712e *man/plotHeatmapGradsAgg.Rd
3f89b230b7889087d2afe65e374bb6ae *man/plotSpatialClustering.Rd
07331effc3d82aa6b4d73df39336dcc3 *man/plotSpatialGeneExpr.Rd
afe52c7dce7b9f54dd424ab25ab23652 *man/plotSpatialProp.Rd
6d81d13eba34df68b6c6f0fdb050e2aa *man/plotSpatialPropAll.Rd
2a8633b5a7e8d09f82fd1657e96671a7 *man/plotTrainingHistory.Rd
757beafea680db7f10f772c7d01cd6e3 *man/plots.Rd
ba2ed80361cbe37229b5f1ecc5abf186 *man/preparingToSave.Rd
af8aec9e4e162384bcd5fb73cd8524cf *man/prob.cell.types.Rd
815824e311cec5f4a20efc699bc88d9d *man/prob.matrix.Rd
4642889da2fbbe2abada43bcbbb7316e *man/project.Rd
2309c58f1a1f2c6efbdaa66ec5081fec *man/saveRDS.Rd
7e278f962654d535d4b3f0bc7ed21cc3 *man/saveTrainedModelAsH5.Rd
4c3092f772e07d5bee9e2ae38d4c358d *man/set.Rd
362883c8f334a5dc19d3fc7342514c96 *man/set.list.Rd
6bf3add83019156c717bf7884429cd5e *man/showProbPlot.Rd
e36a4b2267224fafd96c38bc38cbc684 *man/simMixedProfiles.Rd
4e85fff693135026192563641998fb8b *man/simSCProfiles.Rd
3f0f98ad34f31468407d8c0d3a864d83 *man/single.cell.real.Rd
615fba5eff3ab1521057a2fb86e56740 *man/single.cell.simul.Rd
75e4ddc4f39964d30cb5c754260ba17c *man/spatial.experiments.Rd
1ad52c9053cda84dfb0ae0d21c4feba8 *man/spatialPropClustering.Rd
8ff33f78f0bc14ce523d06f1382bcb6b *man/test.deconv.metrics.Rd
01e0c84b9fd4b0a3b1b696bcf8a2939d *man/test.metrics.Rd
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c8e82d2ace6500422e2681fdd7cb2ad3 *man/topGradientsCellType.Rd
5b87e04884c90d5bf006be6494d9d141 *man/trainDeconvModel.Rd
28e97101ee06f06b8cba8512c335e60c *man/trained.model.Rd
6b0ed2edfec0a427c0996c00389e871a *man/training.history.Rd
0f11f1641f95057079df5fdb082ee143 *man/zinb.params.Rd
d24949684c5acf2253dffa7b6a529201 *man/zinbwave.model.Rd
141e8a933d2b6dc60ecf62bef5c4f1bc *tests/testdata/cellsMetadata.bad.tsv.gz
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8a18f37692ab4cc82d344b1c1b3846f2 *tests/testdata/sparse_data/barcodes.tsv
eace0ee8510fe1a47cf67ac3300d47b5 *tests/testdata/sparse_data/genes.tsv
7c0895c05c1265ff6cc0f7fc79ebc155 *tests/testdata/sparse_data/matrix.mtx
c1d54d932aa91ff66c2b918edec82e43 *tests/testthat.R
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8be9a8dfe13620c676ada60dfa782090 *tests/testthat/test_loadData.R
ce4200ad37d03895f973909d0ced22c4 *tests/testthat/test_plotSpatialCoor.R
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4889583c4c15bc4ce326831db227cecd *tests/testthat/test_utils.R
2bd7eb38f9169cf0822c13bc01e3e52b *vignettes/abserr-celltype-1.png
324b7e15f937d1c2ff7d0546c46baf3e *vignettes/abserr-celltype-sep-1.png
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649517e89e1a8a50fd4d564f51d78ad1 *vignettes/knitr_rendering.R
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4bcd2b156b2a11a82ec324f8360dea22 *vignettes/realModelExample.Rmd
fd6d7a3253da4a2b7777049e67957aa1 *vignettes/realModelExample.Rmd.orig
31b2e6b63e3e205088ebef9a14fc97b2 *vignettes/references.bib
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ce67eea093cea81516b89b4851d17981 *vignettes/zscores-1.png
