0039714bc98219aac74a5347d06c632b *DESCRIPTION
78b3feab6a0d75fcb67d5845f6f3394b *NAMESPACE
195c41b199ad9e50d143c11a69631ba2 *NEWS.md
374eb7ac7d21aeba5bd57b46642f7bf7 *R/Ancillary_Indicators.R
af73c69f697fd4c0854ebfe1f436cf03 *R/HCRs.R
b51f0265d484b8e13479e16e369e9494 *R/Misc_fun.R
affd0b13469e5734d209e6dba8c787b7 *R/RCM2MOM.R
8614fc476ced548af82388f6cf5b0772 *R/RCM_assess.R
5218fb7e313088f564a11b0847180ef1 *R/RCM_data.R
56b2e8fd4ce9348ed30b95032f65d9f6 *R/RCM_est.R
6faf547fb2e798e55bc2b262f5863173 *R/RCM_int.R
fbc3960e658c15194e9d8a27654ec11b *R/RCM_rmd.R
dcbad76bee6c30a87d59c2dff64dccd3 *R/SAMtool-package.R
326830e232dc4e3061e4e8efa97b3e4b *R/assess_DD.R
6632cf4eddefbb64ea58e4be86670f18 *R/assess_SCA.R
d52ea2845c3da784d4139d558db519c5 *R/assess_SCA_ext.R
1856526b0daba645a0dbe4b38d2bcd43 *R/assess_SP.R
3d8c24db8c9b14ddcdf44a9833df6148 *R/assess_SSS.R
313b44e6bb4751941c1d3f31dcc98c75 *R/assess_VPA.R
fa5abae0125a5b9c7e4cf9da96f46d5f *R/assess_cDD.R
0caf9ae25334796949a40ddb5a9dada7 *R/assess_shortcut.R
ee4631e70dd3fded8e5c399ece93a2fb *R/define_S4_class_RCModel.R
975ed1092f8e659b09a34364fcb3dc9f *R/define_S4_class_assess_RCMdata.R
f0119e9c14b9498fe7623458e05730e0 *R/define_S4_class_profile.R
99d11e0921c24a5a7eee0ae7e5abe231 *R/define_S4_class_project.R
1ed91897d858106e144faf8654f39ac5 *R/define_S4_class_retro.R
05dc3932a74afb9cfe50c22725a6aad2 *R/define_S4_generic_RCM.R
feed25cfe3688140f7e89b94877ba6c0 *R/define_S4_generic_posterior.R
98ae058d4a052a7ab540ccf4e457d16f *R/define_S4_generic_simulate.R
2153610f7a3ba1aaec40b12d78f9b7c6 *R/diagnostic.R
b5a8d3144657bb7815ddf2ec45741cb9 *R/document_data.R
40453d66e80cdef4b7f89cb1c11ae74d *R/interim_MP.R
20ade1eff250810e566e8574da38f5f9 *R/report_DD_TMB.R
c55db6dcbd428734258694fce49203ce *R/report_SCA.R
362051f3d8b81dafaf57887bc87a6282 *R/report_SP.R
30b0141105f3a9dd94df578947c9c798 *R/report_SSS.R
bf6c50e10fc94c5b8671d47d9759cdb4 *R/report_VPA.R
7bc6ce7db8531f50015446f7a72a42f3 *R/report_auxiliary.R
5371e0c880dfee387ddc6276faa7ecf8 *R/report_cDD.R
68e2c2d4b7a9bfaf6fb759fe8a111cad *R/report_spict.R
86dd73f78351f5c39a637db550c13137 *R/retrospective_AM.R
6fc2d371e06f98f9f6ddf23f656dc04a *R/rmd_report.R
d5db710b3c7ea8d4752a72b0d461beee *R/z_MPs.R
6e4df15936c2847d502945fb67feca94 *R/zzz.R
9125ef0d85d3036dbaed8f5e51c56d2c *README.md
181b5ac5a69bd3e3e542680739e88fd5 *build/partial.rdb
d5f9c77ed0a813c41e72f47a23b31329 *data/pcod.rda
bb1b13a174ffd95d912d08fe58df4f78 *data/swordfish.rda
c81845d9cb1876d9d6db93e57ea9dccb *inst/include/DD.hpp
074613c251adc31f81e63d23551f073c *inst/include/RCM.hpp
c2aa0e0d0ef39a53063f3fee44954c4c *inst/include/SCA.hpp
452411ae19cb0860fc65323911cab62d *inst/include/SP.hpp
56063b35de5ef99acd07164144fd990d *inst/include/VPA.hpp
21053e2a75827ad5cc7149d810ef46ce *inst/include/cDD.hpp
fd277544762ad4a1254e3a96c01974b2 *inst/include/functions.hpp
9086698084e8fc14a92c9554e9b37381 *inst/include/ns/ns_DD.hpp
e81d73588689b4c4430d76d33ceab575 *inst/include/ns/ns_RCM.hpp
0a46cb9d039506511554768779ae4e02 *inst/include/ns/ns_SCA.hpp
bb00d8a02021703036d6c0103e7980da *inst/include/ns/ns_SP.hpp
bbbfa157d0d4c1964cf44067b26c362c *inst/include/ns/ns_VPA.hpp
1841143507ebe3add4f94f4209a40ffb *inst/include/ns/ns_cDD.hpp
6be09ad42737570050a931ea4270bb2a *man/Assessment-class.Rd
0c9d03a7c61f63dce3ca166033103e2f *man/DD_TMB.Rd
5d82ba050eec68367c433ef47c3c5df9 *man/HCR_FB.Rd
a5c050f0b793c377d9968439dc85c100 *man/HCR_MSY.Rd
838ceb948a2e4c699e4fdac7f4e4b200 *man/HCR_escapement.Rd
325bf1d66a8a6fbfca43043fbc0da0d2 *man/HCR_fixedF.Rd
08088b67bad63d7e9a284c87dee3ebe5 *man/HCR_ramp.Rd
e9aa3772bde05c975073ef4ec3752f89 *man/HCR_segment.Rd
bb24c66320f00d56e592012a3dfbf745 *man/HCRlin.Rd
9b4c8a57ff58717f1d74f091dc6b0d39 *man/Model-based-MP.Rd
838fd32db771ea5fbcfef6f2720acf28 *man/PRBcalc.Rd
c9862f4dc21695b9321126b94edc78aa *man/Probs.Rd
db9eef89ec17c27e548366417d51d581 *man/RCM.Rd
1e5ef52fa50534d359e1971e69610821 *man/RCM2MOM.Rd
a3547ecc32e62a226b30a3e9a727fd0a *man/RCM_assess.Rd
6cfc8ad8f58dc943d6030e7c600ff842 *man/RCMdata-class.Rd
3b1b47babbfb41c5eb9199c2ae767f3f *man/RCModel-class.Rd
87f9f650a0dbc2f38698e32cbe5bb40f *man/SAMtool-package.Rd
4ebf93e9915cc03168cab45496142920 *man/SCA.Rd
48e2cddafec676770d34e282fee81d9a *man/SCA_CAL.Rd
728355e10f10e49405f76607f2ee2ab8 *man/SCA_DDM.Rd
6a354ec2e3a0f065e5d4065b6d58ffad *man/SCA_RWM.Rd
647009f3decf38d6e56a829877242a52 *man/SP.Rd
78a028300b113f4e9feeaf7405a90101 *man/SP_production.Rd
c45de22d590d72f8a3e65d34450fa958 *man/SSS.Rd
a103a2805e0941bb0d27fa6f2818e6d6 *man/Shortcut.Rd
469ef44d7cb296a4c6519fab2ed90817 *man/TAC_MSY.Rd
72fc610fd6e59efdffa0d7905b264399 *man/VPA.Rd
00fd67bfd4381cad3c159e88d27e05e8 *man/cDD.Rd
a1a2969b099e8cabe5ad364f0af5c429 *man/compare_models.Rd
e9ba8c09bf1ed9654b27f6edfb4892cb *man/diagnostic.Rd
f97caf6f39b959e728f030dbd0414338 *man/figures/logo.png
c37f14ef7c528b468efae8201c1bf2b4 *man/getinds.Rd
3e8e0200124659ebdf737b81d1a65069 *man/mahplot.Rd
bf2046a5b0cf55e19f7b6ac69b0a8232 *man/make_MP.Rd
d4d7dd83a351daa04ac950977cfe8fe7 *man/pcod.Rd
eb9282cc8020b1e4735dc8af450cce68 *man/plot.Assessment.Rd
d8fa48790ee01bb292174b5b5c4327d7 *man/plot.RCModel.Rd
2f5e9442dabc1cdce0da73f3cb0d51d2 *man/plot.prof.Rd
973ccabc6d1633e96f31da5658c9f950 *man/plot.retro.Rd
2232fde44e077368299081084ec253a3 *man/plot_SR.Rd
50d034fc948f7c63354a27eed7c42541 *man/plot_betavar.Rd
11384707a97e3b068c9bb3b06a45792a *man/plot_composition.Rd
ca3ac5a54bd97ba6071c10b022224d96 *man/plot_crosscorr.Rd
b54092decd1ecc77fe6cd111d29d66a4 *man/plot_lognormalvar.Rd
594582a745ed519dea9fa1fa2e825fc3 *man/plot_residuals.Rd
0b97ddfca48dce53a009c5a2a57e6e49 *man/plot_steepness.Rd
fdb3eca4543f866f3b415589334e4f59 *man/plot_timeseries.Rd
bc3f9a869c6da38591b4624d78c4c2f0 *man/posterior.Rd
a1685354377121287961fa58736e4e3d *man/prelim_AM.Rd
9b9e6b388ad61199bd4b3e5fda57965a *man/prof-class.Rd
0e691ae573bf0cb7426e84eb1efe1461 *man/profile.Rd
97b4670be2d84e773f3efaffd147c40a *man/project-class.Rd
caf6be38ddaef7f3de8eb61ab3e71439 *man/projection.Rd
a641755f1c1ea1a121de7a885aa1247d *man/retro-class.Rd
d02f2fe992c4ff0453d6d76ffde2fa2c *man/retrospective.Rd
3ab93cb0660c78e1a7e3ffce80481a8e *man/retrospective_AM.Rd
cca573d623023e6fc59dc63be14b5f1b *man/sim-class.Rd
ce6b53a8c5d86451e0fd16f1b812a230 *man/simulate.Rd
aad4fd93bebffd0a4715231390e5d58d *man/summary.Assessment.Rd
cc913602124a63c0ad9738087847da39 *man/swordfish.Rd
5e2f2a37373cedc75d0d73c995fc484f *man/userguide.Rd
3bd19fd512573b60c136f1e0b49bfd28 *src/SAMtool.cpp
