00ea2a6cab1818a4b8653a5c7a64fe4d *DESCRIPTION
92caa773104bd8cc757151730e06bcd8 *LICENSE
6bcd90b2f9129ae679eeb161d0233a54 *NAMESPACE
e873e976d91243543d48ea249afc8090 *NEWS.md
ca2aafef0e36ba22474c6ad384e4eee5 *R/data.R
416c5a88bd14151760287b611542536a *R/debug.R
8157dd73709832ec64d167119476cda0 *R/haystack.R
7a65c270381664eff1db2698b9fdcd37 *R/haystack_IO.R
15ad01ae1d1116e64d182eeadfedb3cd *R/haystack_clustering.R
690bc4051981bddf79b987724b9847a4 *R/haystack_clustering_highD.R
fbb3e65fa7684d866f2c980e86064c4e *R/haystack_continuous.R
98c40db4c9809527284de7aca6e050bd *R/haystack_highD.R
8fda79c44f7002a8b4cc9dbe66fecf2b *R/haystack_visualization.R
f602ca816f976a15cd5c49c662c1dc94 *R/randomization.R
4d5dc9fd463834341a059e12a0905b5f *R/s3.R
2a482167b68b7abf2da98254effd0f3c *R/singleCellHaystack-package.R
4a4f68f40dbb563e0638e0a91bd69158 *R/sparse.R
76e123f5dcc8dee07678412adc0a2a84 *build/partial.rdb
0ab22cbc3f4cd4d1184a2ad780f1abcd *build/vignette.rds
9b9da6d5a58689495957b71af287381e *data/toy.rda
d9cabb5f4da0251c32c75157339ce6a1 *inst/CITATION
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731c1e403895399c22866b6257690366 *inst/doc/a01_toy_example.html
f446d06259699ebc8727e258da385d35 *man/dat.expression.Rd
2f362ce11f1ed2df80f2ed24ac88bc87 *man/dat.tsne.Rd
eb8ebdf3e739ba2a480683faee79a14c *man/default_bandwidth.nrd.Rd
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22fd10caa5c20a12f1da53558bfd5d09 *man/extract_row_lgRMatrix.Rd
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121642898b812137fc7264002e23b28d *man/figures/README-example5-1.png
adf9aa78189b31874829dfff0d455652 *man/get_D_KL.Rd
dc8d32e1c02e8f7588db877f44548c7a *man/get_D_KL_continuous_highD.Rd
65a55a9c22895de35594fb993bfbfa46 *man/get_D_KL_highD.Rd
91b0ee5749fc9f114afda148e0f597c0 *man/get_density.Rd
238065f4e27e7c34a6dd490141593c27 *man/get_dist_two_sets.Rd
6dff324b876b6c250052039d21259927 *man/get_euclidean_distance.Rd
929ce105dca84794db329c9f344ffa99 *man/get_grid_points.Rd
20987e2ed9cef1d2d1b4e201db40f058 *man/get_log_p_D_KL.Rd
8d699bfe334762cba1bd1b59521bc712 *man/get_log_p_D_KL_continuous.Rd
4f0582145a8cb68054ee4c4c33de4ae7 *man/get_parameters_haystack.Rd
ab2941e8281c1041ef3eadd725eb8f4e *man/get_reference.Rd
592b5f6d1039e0a896fa5b78e0c7c230 *man/haystack.Rd
ffdb69ba4b17177ff37b4d0b685a065a *man/haystack_2D.Rd
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47f93d27691e2531026837ef092d910d *man/haystack_highD.Rd
6cbc11faa6dec0df6c2101d3eb22eb84 *man/hclust_haystack.Rd
f17d2164d7be85312e3b6bac447ccc34 *man/hclust_haystack_highD.Rd
dad549a8103f5b4aa200048eaf46416a *man/hclust_haystack_raw.Rd
20e46ff86923fdf69367fd16e440279a *man/kde2d_faster.Rd
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cf2f84791b85fb3ed034807a53231131 *man/plot_compare_ranks.Rd
b22a65703df7426fa6179f0e0919b288 *man/plot_gene_haystack.Rd
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8e2e27c9c319aad07d56f702e77f21dd *man/plot_gene_set_haystack.Rd
631ba0eabf3fe1dd9428bb4d3e3d0e00 *man/plot_gene_set_haystack_raw.Rd
59a2d3fadaa98e1ab5590164c405df5d *man/plot_rand_KLD.Rd
97fb0d477a3223a4e05b5e781813e1fe *man/plot_rand_fit.Rd
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6ae4d974939c164ed6e550576adc2637 *man/singleCellHaystack-package.Rd
5c755d6fcc363a37b041dcf14fb866e4 *man/write_haystack.Rd
a6131b24bcb8f4d73c33a4d2f118f7a0 *tests/testthat.R
0cafabf2f0ec43e46b1fdeb0a4749bbd *tests/testthat/test-extract_row.R
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fbc03e7ba4c61274e0244e2fa5d21671 *tests/testthat/test-haystack_sparse.R
b51925a9f10c101ba84d117a48ddd2b6 *vignettes/a01_toy_example.Rmd
f3a84b6ee8c9d84a024371355d539ac3 *vignettes/examples/a02_example_scRNAseq.Rmd
f18b1fa46589026aa6f83cfa75ced15d *vignettes/examples/a03_example_spatial_visium.Rmd
16e9afbbf2d330840cdea1412bab4421 *vignettes/examples/a04_example_spatial_slideseqV2.Rmd
f5bfa230eadca7495cc229f03b62810a *vignettes/examples/a05_moca_100k.Rmd
6441892a2682279d8a182363e2ae8ee1 *vignettes/examples/a06_pseudotime.Rmd
5c93487172a79b11ddee24ac89dc3ef8 *vignettes/examples/a07_gene_sets.Rmd
80e14b6d9fe167afab7f67ad5c026213 *vignettes/examples/a08_gene_clustering.Rmd
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