* using log directory 'd:/Rcompile/CRANpkg/local/4.5/quincunx.Rcheck' * using R version 4.5.2 (2025-10-31 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 14.3.0 GNU Fortran (GCC) 14.3.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * checking for file 'quincunx/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'quincunx' version '0.1.10' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'quincunx' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [1s] OK * checking whether the package can be loaded with stated dependencies ... [1s] OK * checking whether the package can be unloaded cleanly ... [1s] OK * checking whether the namespace can be loaded with stated dependencies ... [1s] OK * checking whether the namespace can be unloaded cleanly ... [1s] OK * checking loading without being on the library search path ... [1s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [7s] OK * checking Rd files ... [2s] OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... [0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking examples ... [2s] ERROR Running examples in 'quincunx-Ex.R' failed The error most likely occurred in: > ### Name: get_cohorts > ### Title: Get PGS Catalog Cohorts > ### Aliases: get_cohorts > > ### ** Examples > > # Get information about specific cohorts by their symbols (acronyms) > get_cohorts(cohort_symbol = c('23andMe', 'IPOBCS')) Error in `purrr::map()`: ℹ In index: 1. Caused by error: ! object 'at_depth' is not exported by 'namespace:purrr' Backtrace: ▆ 1. ├─quincunx::get_cohorts(cohort_symbol = c("23andMe", "IPOBCS")) 2. │ ├─quincunx:::coerce_to_s4_cohorts(...) 3. │ └─quincunx:::get_cohort_by_cohort_symbol(...) 4. │ ├─purrr::pmap(...) 5. │ │ └─purrr:::pmap_("list", .l, .f, ..., .progress = .progress) 6. │ │ └─purrr:::vctrs_list_compat(.l, error_call = .purrr_error_call) 7. │ │ └─purrr:::vctrs_vec_compat(x, user_env) 8. │ └─purrr::map(...) 9. │ └─purrr:::map_("list", .x, .f, ..., .progress = .progress) 10. │ ├─purrr:::with_indexed_errors(...) 11. │ │ └─base::withCallingHandlers(...) 12. │ ├─purrr:::call_with_cleanup(...) 13. │ └─purrr (local) .f(.x[[i]], ...) 14. │ └─quincunx (local) f(...) 15. │ └─quincunx:::get(...) 16. │ └─quincunx:::request_all(...) 17. │ └─quincunx:::is_paginated(obj$json) 18. │ └─quincunx:::count(json_string) 19. ├─base::loadNamespace(x) 20. │ └─base::namespaceImportFrom(...) 21. │ └─base::importIntoEnv(impenv, impnames, ns, impvars) 22. │ └─base::stop(...) 23. └─base::.handleSimpleError(...) 24. └─purrr (local) h(simpleError(msg, call)) 25. └─cli::cli_abort(...) 26. └─rlang::abort(...) Execution halted * checking for unstated dependencies in 'tests' ... OK * checking tests ... [2s] ERROR Running 'testthat.R' [2s] Running the tests in 'tests/testthat.R' failed. Complete output: > library(testthat) > library(quincunx) > > test_check("quincunx") Saving _problems/test-count-2.R Saving _problems/test-count-7.R Saving _problems/test-count-11.R Saving _problems/test-is_paginated-3.R Saving _problems/test-is_paginated-13.R [ FAIL 5 | WARN 0 | SKIP 0 | PASS 12 ] ══ Failed tests ════════════════════════════════════════════════════════════════ ── Error ('test-count.R:2:3'): normal usage ──────────────────────────────────── Error: object 'at_depth' is not exported by 'namespace:purrr' Backtrace: ▆ 1. ├─testthat::expect_identical(...) at test-count.R:2:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─quincunx:::count("{\"count\":0,\"next\": \"asdas\"}") 5. └─base::loadNamespace(x) 6. └─base::namespaceImportFrom(...) 7. └─base::importIntoEnv(impenv, impnames, ns, impvars) ── Error ('test-count.R:7:3'): returns the top level match ───────────────────── Error: object 'at_depth' is not exported by 'namespace:purrr' Backtrace: ▆ 1. ├─testthat::expect_identical(...) at test-count.R:7:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─quincunx:::count("{\"count\":42,\"next\":{\"count\":43}}") 5. └─base::loadNamespace(x) 6. └─base::namespaceImportFrom(...) 7. └─base::importIntoEnv(impenv, impnames, ns, impvars) ── Error ('test-count.R:11:3'): no match returns NA_integer_ ─────────────────── Error: object 'at_depth' is not exported by 'namespace:purrr' Backtrace: ▆ 1. ├─testthat::expect_true(is.na(count("{\"count\": null}"))) at test-count.R:11:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─quincunx:::count("{\"count\": null}") 5. └─base::loadNamespace(x) 6. └─base::namespaceImportFrom(...) 7. └─base::importIntoEnv(impenv, impnames, ns, impvars) ── Error ('test-is_paginated.R:3:3'): is not paginated ───────────────────────── Error: object 'at_depth' is not exported by 'namespace:purrr' Backtrace: ▆ 1. ├─testthat::expect_false(is_paginated("{\n \"id\": \"PGP000001\"\n }")) at test-is_paginated.R:3:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─quincunx:::is_paginated("{\n \"id\": \"PGP000001\"\n }") 5. │ └─quincunx:::count(json_string) 6. └─base::loadNamespace(x) 7. └─base::namespaceImportFrom(...) 8. └─base::importIntoEnv(impenv, impnames, ns, impvars) ── Error ('test-is_paginated.R:13:3'): is paginated ──────────────────────────── Error: object 'at_depth' is not exported by 'namespace:purrr' Backtrace: ▆ 1. ├─testthat::expect_true(is_paginated(txt)) at test-is_paginated.R:13:3 2. │ └─testthat::quasi_label(enquo(object), label) 3. │ └─rlang::eval_bare(expr, quo_get_env(quo)) 4. ├─quincunx:::is_paginated(txt) 5. │ └─quincunx:::count(json_string) 6. └─base::loadNamespace(x) 7. └─base::namespaceImportFrom(...) 8. └─base::importIntoEnv(impenv, impnames, ns, impvars) [ FAIL 5 | WARN 0 | SKIP 0 | PASS 12 ] Error: ! Test failures. Execution halted * checking PDF version of manual ... [22s] OK * checking HTML version of manual ... [15s] OK * DONE Status: 2 ERRORs